RNA id: TU1354240


Basic Information

Item Value
RNA id TU1354240
length 221
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1187452
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54188567 ~ 54198015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

Gctggtacggtggtgttttagtggaggtgaatggatggttagtttgatatgttcagacagagtagtatatattctggtacggtggtgttttagtggaggtgaatggatggttagtttgatatgttcagacagagtaatatatattctggtacggtggtgttttagtggaggtgaatggacggttagtttgatatgttcagacagagtagtatatactctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354215 lncRNA upstream 40869 54147198 ~ 54147698 (+) True G1187433
TU1354153 lncRNA upstream 176955 54010555 ~ 54011612 (+) True G1187376
TU1354149 lncRNA upstream 202217 53985631 ~ 53986350 (+) True G1187372
TU1354097 lncRNA upstream 332596 53855382 ~ 53855971 (+) True G1187322
TU1354003 lncRNA upstream 460807 53725772 ~ 53727760 (+) True LOC110486795
TU1354280 lncRNA downstream 71304 54269319 ~ 54269899 (+) True G1187486
TU1354336 lncRNA downstream 149987 54348002 ~ 54348250 (+) True G1187524
TU1354345 lncRNA downstream 172597 54370612 ~ 54372602 (+) True G1187532
TU1354319 lncRNA downstream 229587 54427602 ~ 54433146 (+) True LOC110538772
TU1354390 lncRNA downstream 404226 54602241 ~ 54602568 (+) True G1187571
XR_005035600.1 mRNA upstream 142165 54041745 ~ 54046402 (+) False LOC110538759
XR_005035601.1 mRNA upstream 142168 54041788 ~ 54046399 (+) True LOC110538759
XM_036941512.1 mRNA upstream 397015 53743127 ~ 53791552 (+) True cyth3b
XR_002468117.2 mRNA upstream 460784 53725316 ~ 53727783 (+) False LOC110486795
XM_036941517.1 mRNA downstream 74623 54272638 ~ 54300365 (+) False axin2
XM_036941520.1 mRNA downstream 74623 54272638 ~ 54300365 (+) False axin2
XM_036941518.1 mRNA downstream 75618 54273633 ~ 54300365 (+) False axin2
XM_036941519.1 mRNA downstream 76536 54274551 ~ 54300365 (+) False axin2
XM_036941521.1 mRNA downstream 187490 54385505 ~ 54425642 (+) False tex2
TU1353929 other upstream 738103 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other upstream 738851 53446423 ~ 53449716 (+) True LOC110538743
TU1353565 other upstream 1165586 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 1799371 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 1832626 52274330 ~ 52355941 (+) True G1185855
TU1354170 other downstream 66051 54264066 ~ 54265028 (+) True G1187390
TU1354165 other downstream 93570 54291585 ~ 54300313 (+) True axin2
TU1355296 other downstream 795659 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 795659 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 795659 54993674 ~ 54997295 (+) True G1188344

Expression Profile