RNA id: TU1354957


Basic Information

Item Value
RNA id TU1354957
length 989
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1188073
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54264036 ~ 54265024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATGGAAAAATGACTTTAATAAAACAATGCATTCGGTATGTACATTCAGTATGTCTCATGGAATCACAAAAaacaacatacactacatggccaaaagtatgtggacacctgctcgtcgaacatctcattccaaaatcatgggaattaatatggagttggtcctccctttgctgctaccacagcctctagtcttctggTAAGGCTTCCCActcgatgttggaacattgctgcggggacttccttccactcagccacaagagcattagtgaggtcgggcactgatgttgggtgattaggcctggtttgtagtcggctttccaattcatcccaaaggggtttgatgtggttgaggtcagggctctgtgcaggtcagtcaagttcttccatatcgatctcaacaaaccatttctgtatggacctcgctttgtgcacggggcattgtcatgctgaaacaggaaagggccttcccccaaactgttgctacaaagttggaagcacagaatcgtctagaatgtgattgtatgctgtagtattaagatttcccttcactggaactaacgatcctgaaccatgaaaaacagccccaggccattattcctcctccaccaaactttacagttggcactatgcattggggcaggtagcgttctcctggcaaccGCCACACCcaattcgtccgtcggactgcaagatggtgacgcgtgattcatcactccagagaacgcatttccactgttccagagtccaatgacggcgagctttacaccactccagccgacgcttggcattgcgcatggtgatcttgtatgtggctgctcgaccatggaaatccatttcatgaagctcccaacgaacatgCAACGCACTTCAGCaatcggcggtcccattctgggagcttgtgtggcctaccactttgtggctgagcagttgttgcgcCTAgatttttccacttcacaataacatcacttacagttgaccagggcagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354914 lncRNA downstream 95708 54167986 ~ 54168328 (-) True G1188033
TU1354906 lncRNA downstream 114598 54149052 ~ 54149438 (-) True G1188025
TU1354889 lncRNA downstream 161502 54101728 ~ 54102534 (-) False G1188011
TU1354891 lncRNA downstream 161502 54101728 ~ 54102534 (-) True G1188011
TU1354863 lncRNA downstream 230944 54025475 ~ 54033092 (-) True G1187986
TU1354977 lncRNA upstream 25281 54290305 ~ 54290605 (-) True G1188082
TU1354978 lncRNA upstream 25811 54290835 ~ 54291127 (-) True G1188083
TU1355002 lncRNA upstream 83106 54348130 ~ 54348330 (-) True G1188106
TU1355011 lncRNA upstream 132252 54397276 ~ 54397630 (-) True G1188115
TU1355034 lncRNA upstream 144887 54409911 ~ 54470838 (-) False G1188127
XM_036941514.1 mRNA downstream 214444 53806640 ~ 54049592 (-) False si:ch73-374l24.1
XM_036941513.1 mRNA downstream 460684 53793576 ~ 53803352 (-) True cacng5b
XM_021558620.2 mRNA downstream 538767 53713123 ~ 53725269 (-) True LOC110486794
XM_021558619.2 mRNA downstream 538770 53713123 ~ 53725266 (-) False LOC110486794
XM_021558610.2 mRNA downstream 555766 53699239 ~ 53708270 (-) True LOC110486791
XR_005035819.1 mRNA upstream 161239 54426263 ~ 54426404 (-) True LOC118938612
XR_005035602.1 mRNA upstream 161412 54426436 ~ 54427449 (-) False LOC110538769
XR_002475811.2 mRNA upstream 161412 54426436 ~ 54427451 (-) False LOC110538769
XM_036941540.1 mRNA upstream 471690 54736714 ~ 54740723 (-) True LOC118938329
XM_036939769.1 mRNA upstream 476455 54741479 ~ 54748709 (-) False LOC110486825
TU1354775 other downstream 453279 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1354707 other downstream 626223 53607024 ~ 53637813 (-) True mosmoa
TU1353318 other downstream 1604227 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 2233376 52025918 ~ 52030660 (-) True G1186381
TU1352758 other downstream 2252825 52010690 ~ 52011211 (-) True G1186216
TU1355055 other upstream 183859 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 200509 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 334377 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 479401 54744425 ~ 54748658 (-) True LOC110486825
TU1355147 other upstream 558888 54823912 ~ 54831322 (-) False LOC110485228

Expression Profile