RNA id: TU1354170


Basic Information

Item Value
RNA id TU1354170
length 963
RNA type TUCP
GC content 0.48
exon number 1
gene id G1187390
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54264066 ~ 54265028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgtgaagtggaaaaatcTAGgcgcaacaactgctcagccacaaagtggtaggccacacaagctcccagaatgggaccgccgattGCTGAAGTGCGTTGcatgttcgttgggagcttcatgaaatggatttccatggtcgagcagccacatacaagatcaccatgcgcaatgccaagcgtcggctggagtggtgtaaagctcgccgtcattggactctggaacagtggaaatgcgttctctggagtgatgaatcacgcgtcaccatcttgcagtccgacggacgaattgGGTGTGGCggttgccaggagaacgctacctgccccaatgcatagtgccaactgtaaagtttggtggaggaggaataatggcctggggctgtttttcatggttcaggatcgttagttccagtgaagggaaatcttaatactacagcatacaatcacattctagacgattctgtgcttccaactttgtagcaacagtttgggggaaggccctttcctgtttcagcatgacaatgccccgtgcacaaagcgaggtccatacagaaatggtttgttgagatcgatatggaagaacttgactgacctgcacagagccctgacctcaaccacatcaaacccctttgggatgaattggaaagccgactacaaaccaggcctaatcacccaacatcagtgcccgacctcactaatgctcttgtggctgagtggaaggaagtccccgcagcaatgttccaacatcgagTGGGAAGCCTTAccagaagactagaggctgtggtagcagcaaagggaggaccaactccatattaattcccatgattttggaatgagatgttcgacgagcaggtgtccacatacttttggccatgtagtgtatgttgttTTTTGTGATTCCATGAGACATACTGAATGTACATACCGAATGCATTGTTTTATTAAAGTCATTTTTCCATCATATTA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354240 lncRNA upstream 66051 54188567 ~ 54198015 (+) False G1187452
TU1354239 lncRNA upstream 66528 54192088 ~ 54197538 (+) True G1187452
TU1354215 lncRNA upstream 116368 54147198 ~ 54147698 (+) True G1187433
TU1354153 lncRNA upstream 252454 54010555 ~ 54011612 (+) True G1187376
TU1354149 lncRNA upstream 277716 53985631 ~ 53986350 (+) True G1187372
TU1354280 lncRNA downstream 4291 54269319 ~ 54269899 (+) True G1187486
TU1354336 lncRNA downstream 82974 54348002 ~ 54348250 (+) True G1187524
TU1354345 lncRNA downstream 105584 54370612 ~ 54372602 (+) True G1187532
TU1354319 lncRNA downstream 162574 54427602 ~ 54433146 (+) True LOC110538772
TU1354390 lncRNA downstream 337213 54602241 ~ 54602568 (+) True G1187571
XM_036941515.1 mRNA upstream 69 54052748 ~ 54263997 (+) False cep112
XM_036941516.1 mRNA upstream 69 54052749 ~ 54263997 (+) True cep112
XR_005035600.1 mRNA upstream 217664 54041745 ~ 54046402 (+) False LOC110538759
XR_005035601.1 mRNA upstream 217667 54041788 ~ 54046399 (+) True LOC110538759
XM_036941512.1 mRNA upstream 472514 53743127 ~ 53791552 (+) True cyth3b
XM_036941517.1 mRNA downstream 7610 54272638 ~ 54300365 (+) False axin2
XM_036941520.1 mRNA downstream 7610 54272638 ~ 54300365 (+) False axin2
XM_036941518.1 mRNA downstream 8605 54273633 ~ 54300365 (+) False axin2
XM_036941519.1 mRNA downstream 9523 54274551 ~ 54300365 (+) False axin2
XM_036941521.1 mRNA downstream 120477 54385505 ~ 54425642 (+) False tex2
TU1354243 other upstream 66051 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 69928 54188567 ~ 54194138 (+) False G1187452
TU1353929 other upstream 813602 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other upstream 814350 53446423 ~ 53449716 (+) True LOC110538743
TU1353565 other upstream 1241085 53004052 ~ 53022981 (+) True LOC110539012
TU1354165 other downstream 26557 54291585 ~ 54300313 (+) True axin2
TU1355296 other downstream 728646 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 728646 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 728646 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 856233 55121261 ~ 55122619 (+) True G1188386

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU390686 True 1050 TUCP 0.48 1 NC_047616.1 9791684 ~ 9792733 (+)
mexican tetra (Astyanax mexicanus) TU390686 True 550 lncRNA 0.42 2 NW_019172581.1 228239 ~ 251577 (-)