RNA id: TU1354336


Basic Information

Item Value
RNA id TU1354336
length 249
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1187524
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54348002 ~ 54348250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacacagaaataggaaaaacatagaaacacaaacaaagactgcccaccccaactcacgccctgaccatactaaataaagtcaaaacaaaggaaataaaggtcagaacgtgacaacgccagtcacgtggtctgtggttgtgaagccggttggatgtactgccaaattttctaaaacgacgttggaggcggcttatggtagagaaatgaacattcaattatgtggcaacagctctggtcctgcagtcagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354280 lncRNA upstream 78103 54269319 ~ 54269899 (+) True G1187486
TU1354240 lncRNA upstream 149987 54188567 ~ 54198015 (+) False G1187452
TU1354239 lncRNA upstream 150464 54192088 ~ 54197538 (+) True G1187452
TU1354215 lncRNA upstream 200304 54147198 ~ 54147698 (+) True G1187433
TU1354153 lncRNA upstream 336390 54010555 ~ 54011612 (+) True G1187376
TU1354345 lncRNA downstream 22362 54370612 ~ 54372602 (+) True G1187532
TU1354319 lncRNA downstream 79352 54427602 ~ 54433146 (+) True LOC110538772
TU1354390 lncRNA downstream 253991 54602241 ~ 54602568 (+) True G1187571
TU1354389 lncRNA downstream 262594 54610844 ~ 54612914 (+) True LOC118938328
TU1354399 lncRNA downstream 300308 54648558 ~ 54648781 (+) True G1187579
XM_036941517.1 mRNA upstream 47637 54272638 ~ 54300365 (+) False axin2
XM_036941520.1 mRNA upstream 47637 54272638 ~ 54300365 (+) False axin2
XM_036941518.1 mRNA upstream 47637 54273633 ~ 54300365 (+) False axin2
XM_036941519.1 mRNA upstream 47637 54274551 ~ 54300365 (+) False axin2
XM_036941515.1 mRNA upstream 84005 54052748 ~ 54263997 (+) False cep112
XM_036941521.1 mRNA downstream 37255 54385505 ~ 54425642 (+) False tex2
XM_036941522.1 mRNA downstream 37255 54385505 ~ 54425642 (+) True tex2
XM_036941523.1 mRNA downstream 79315 54427565 ~ 54455175 (+) False LOC110538772
XM_036941524.1 mRNA downstream 79315 54427565 ~ 54455175 (+) False LOC110538772
XM_036941525.1 mRNA downstream 109305 54457555 ~ 54470898 (+) False samd9l
TU1354165 other upstream 47689 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 82974 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 149987 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 153864 54188567 ~ 54194138 (+) False G1187452
TU1353929 other upstream 897538 53446423 ~ 53450464 (+) False LOC110538743
TU1355296 other downstream 645424 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 645424 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 645424 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 773011 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 992474 55340724 ~ 55366316 (+) True LOC110539040

Expression Profile