RNA id: TCONS_00042877


Basic Information

Item Value
RNA id TCONS_00042877
length 6253
RNA type mRNA
GC content 0.47
exon number 43
gene id XLOC_021601
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18722715 ~ 18757078 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGAACACTTGTTTCGAGTCCAACGCTTTTAGACGTTACTGAGGTGCTTGAGTGCAGGTCCGGGACCGGAAGAGTTAATCATGTCCCGTTTTATGGAACTGAGGGAGTTTGGAGAGGCGGCCACATTTCTGCGTAAAACCAACCTGGAGCAACTCGCCGCGCAGTCCCATGCGTTTGATGGGAAGAAGCGTGTTTGGATTCCAGATGAGAAGGAAGCATACATTGAGGTGGAGATCAAAGATACAGATGGAGACAAAGTCATGGTGGAGACCAAAGATGGAAGGATGTTAACAGTGAAAGAGGAAGATATTCAGCAGATGAATCCGCCAAAGTTTGACTTGATGGAAGACATGGCCATGCTCACGCACCTCAATGAGGCCTCGGTTCTTTTCAACCTCAGCCGTCGCTACAGTTTTTGGATGATCTATACATATTCAGGGTTGTTTTGTGTGACAGTAAACCCGTATAAATGGCTTCCCGTCTACTCTTCTGAAGTGGTTGCAGCATATAAGGGAAAGCGTCGCTCAGATGTTCCACCTCACATCTATTCCATAGCAGACAATGCCTACAATGACATGCTAAAAAATCGTGAAAACCAGTCAATGCTTATCACCGGAGAATCCGGTGCTGGCAAAACTGTCAACACGAAACGTGTAATTCAGTATTTTGCCATTATAGCTGCTCTTGGCGAAGCAGGGGGCAAAAAAGGAGGTACATTAGAAGATCAGATCATTGAGGCCAACCCGGCTATGGAAGCTTTTGGCAATGCAAAAACCCTGAGGAATGACAACTCATCCCGCTTTGGAAAATTCATACGCATCCATTTTGGTCCTACAGGGAAGCTTGCATCTGCTGACATTGACATCTacCTTCTGGAAAAATCCAGAGTGATTTTTCAGCAAACAGGAGAGAGAAGCTACCACATCTATTACCAGATCCTCTCGCACAGGAAACCAGAACTCCAAGACATGCTGCTGGTGTCATCAAATCCCTTCGATTACCACTTCTGCTCGCAGGGTGTTATAACTGTGGACAACATGGATGACGGCGATGAGCTGCTCGCGACTGATCATGCGATGGACACTCTTGGATTCACTCCTGAGGAGAAGTATGGCTGCTACAAGATAGTCGGTGGCATCATGCACTTTGGCAACATGAAGTTCAAAGTGAAGCAGAGAGAGGAGCAAGCAGAAGCAGACGGCACTGAAAGTGCGGACAAAGCATCCTATCTCATGGGGATCAGTTCAGCTGACCTCATAAAGGGACTGCTTCACCCTCGAGTGAAAGTGGGCAATGAGTACATTGTCAGAGGACAGACAGTTGAACAGGTGACCTATGCTGTTGGTGCTTTGGCGAAAGCTACATATGACCGCATGTTTAAATGGCTGGTGGGCAGAATTAATAAAACTCTGTATACGGCCATCCCACGTCAGTTCTTCATAGGAGTGCTGGACATAGCAGGCTTTGAGATCTTTGAGTTCAACAACTTTGAGCAGATGTGTATCAACTTCACCAATGAAAAACTGCAACAGTTTTTCAACCATCACATGTTTATCCTCGAGCAAGAAGAGTACAAAACAGAGGGCATTGAATGGACTTTCATAGACTTCGGATTAGACCTGCAGGCCTGCATTGACCTCATTGAGAAGCCATTGGGAATACTGTCTATTCTGGAGGAGGAGTGCATGTTCCCTAAAGCCACGGAGAGCAGCTTCAAAGCGAAACTCTATGATAATCTCCTCGGCAAGTCTCCCAATTTCCTGAAACCGAGGCCAGACAAAAAACGCAAATACGACACACACTTTGAGCTGGTGCATTACGCTGGAGTGGTGCCGTACAACATCAATGGGTGGCTCGACAAGAACCGAGATCCTCTGAATGAAACAGTGGTTGGGATCTTTCAGAGGTCGTCCAacaagttaatgtcaagcctgTTCGAGAACTTCATCAGCTTAGATTCAGGTTCAGAAGCAAAGCCTGGGAGCAAAGAGAAGAGGAAGAAAGGAGCATCATTCCAAACAGTGTCCCAGCTGCACAAGGAGAATCTAAACAAGCTGATGACTAATTTGAGAAGCACTCAGCCTCATTTTGTGCGATGCATTATTCCCAATGAAGCCAAGAACCCAGGCATGATGGAGCCATTTTTGGTTTTGCACCAGCTTCGTTGCAATGGAGTTCTGGAAGGGATCCGCATTTGCAGAAAAGGATTTCCAAACCGCATTCTCTATGCAGAGTTTAAACAACGCTACCGTATCCTGAACCCATTGGCCATCCCAGAGGACACGTATGTGGACAGCAGGAAAGCTGTGGAGAAATTGCTTGGGTCTCTGGATATTGACCACACGCAGTACAAGTTTGGCCACAGCAAGGTCTTCTTCAAAGCTGGACTACTTGGACAGCTGGAGGACATGAGGGATGAACGGCTTTCTAAAGTGCTCACCTTGTTGCAGGCCTTCTGCAGGGGCAAACTCATGCGGATGGAGCGCAAGAGGATGATGAAGGAGAAGGAAGCTCTAATGGTGATTCAATGGAACATTCGGGCCTTTTATGCAGTGAAGAACTGGCCGTGGATGTGTCTGTTCTTCAAGATCAAGCCACTGTTGAGGAGCGCAGCTACAGAAAAGGAGCTTGCAACACTGAAGGAGGAGTTTCAGAAGCTAAAGGAGGCTCTGGAGAGATCTGAGGTGAAGAGGAAGGAGTTAGAGGAGAAACAGGTGTCTTTGGTACAAGAGAAAAATGACCTGTCATTACAACTTCAAGCTGAGCAGGATAACCTGGCTGACGCTGAGGATCGTTGTAACCTGCTGATCAAGGCTAAGATCCAGATGGAGGGGAAAATTAAGGAGCTGATGGAGAGGCTGGAGGATGAAGAGGAGATGAACGCCACCATCCTAGCCAAGAAACGCAAACTTGAGGATGAGTGTATCGAGCTGAAGAAAGACCTGGATGATCTGGAGATTACTCTGGCCAAGGTGGAGAAGGAAAAGCATGCTACTGAGAACAAGGTGAAAAACTTAGTGGAGGAAATGGCAGCATTGGATGAAACCATCTCCAGGCTAAGTAAAGAGAAGAAAGCCCTCCAGGATGCCCACCAGCAGGCTCTGGAAGACCTGCAGTCTGAGGAGAACAAAGTGAACATGCTGTCAAAGGCCAAGATCAAGCTGGAGCAGCAGGTGGATGATTTAGAGGGCTCATTGGAGCAAGAGAAGAAAGTGCGTATGGATCTGGAACGAGTAAAGCGAAAGCTTGAGGGAGATCTGAAGCTTTCCGTTGAGTCATCCATGGATTTAGATAACAGCAAACAGCAGCTGGAGGAAAGACTGAAGAAGAAAGACCATGAAATGGTTCAAATAGGTGCAAAGATCGAAGAGGAGCAAGCCTTGGTTATTCAACTacataagaaaataaaagaattacAGACACGTATAGAAGAGCTAGAGGAGGAACTTGAGGCTGAGAGAGCAGCTCGATCAAAGTCAGAAAAGCAGCGCAGTGATGTGTCCAGAGAACTGGAAGAGCTAAGTGAACGTCTGGAGGAAGCAGGAGGTGCTACTACTGCTCAGATCGAGATGAACAAGAAGCGCGAGGCTGACTTTATAAAGCTGCGCAGAGACCTGGAAGAAGCCTCGCTGCATCATGAAACCACTATAGCCATGCTACGGAGAAAGCATGCAGACACGGTGGCTGAGATGGGGGAGCAACTGGACAACCTGCAGAGGGTCAAACAGAAGCTGGAGAAGGAAAAGGCAGAAACCAGAATGGAGTGTGAAGATCTGGCATCTAATGTGGAACATCTCTCCAGAGCCAAAACTACAACAGAGAAGATGTGCAGGATGTATGAGGATCAGTTAAATGAGTCTAAAACCAAGATTGAGGAACTGCAGAGGCAGCTAATGGATGTCACTTCTCAAAAGGCACGGGCCCAGACAGAGAGTGCTGAGGTCAGTCGCAGGCTGGAAGAGAAAGAGGTTCTGGTCATGCAACTGCAGAGGACGAAGATCGCTTTCAGCCAAACTGTGGAAGAGCTGAAGAAACAGCTAGAGGAGGAATCCAAAGCAAAGAACAGTTTAGCTCATGCGGTACAGTCATCAAGGCATGACTGTGATCTCCTGAGAGAGCAGTTCGAGGAGGAGCAGGAGGCCAAATCCGAGTTGCAGCGTGCTCTGTCGAAAGCCAACATTGAGATCGCACAGTGGAGGACAAAGTATGAGACTGATGCCATTCAGAGGACTGATGAACTAGAGGACGCCAAGAAGAAGCTGGTTGCACGACTCCAGGGCTCTGAGGAGGCAGTGGAAGCATCCAATGCTAAATGTGCCTCGCTGGAGAAGACCAAGCACCGTCTGCAGACTGAGATCGAGGACTTGATGGTTGACTTGGAACGCTCTAATGCTGTGGCCATTGCACTGGACAAAAAGCAACGCAATTTTGATAAGGTGCTGTCTGAGTGGAGGCAGAAGTTTGAGGAGACACAGTCCGAGCTGGAAGGCTCTCAGAAAGAGTCCCGAAGCCTCAGCACAGAGCTCTTTAAACTCAAAAACTCCTATGAAGAAGCCCTTGACCAGCTGGAGACTATCAAACGGGAGAACAAGAATTTGCAAGAGGAAATAACTGACTTGACTGATCAGATTAGTCAAGGCAACAAGACCATCCATGAGCTCGAACAGATGAAGAAGGTTCTTGACCATGAGAAGTGTGACATTCAAGCAGCACTGGAGGAGGCAGAGGGCACTCTGGAGCATGAGGAGAGTAAGACTTTACGCGTGCAGCTGGAGCTCAGCCAGACCAAGACTGAAGTTGAGAAGAAACTTGCAGAGAGAGATGAGGAGATTGACAATCTCCGTCGAAACCATCAGCGGACTCTGGAGGGCATGCAGACCACGCTGGATGCAGAGACCAGAGCACGTAATGAGGCAATCAGGGTTAAGAAAAAGATGGAGAATGATATGAATGAGATGGAGATCCATCTGAACCATGCGAACAGACAGGCTGTGGAGTCACAGAAAATGGTTCGCAATCTACAGCTTCAAATCAAGGACCTGCAGGTAGAGTTAGATGAGTCTATGCATCATTGTGAGGAGCTGAAGGAGCAGGTGGCAGTGACAGAGAGGAGAAACACGCTGCTGTCAGCAGAACTGGAGGAGCTGCGTGGTGTAGCTGAGCAAACAGATCGAATGCGTAAAGTGGCTGAGCACGAGCTACTGGAGTCCAGCGAGAGAGTTAACCTGCTGCACGCTCAGAACACCGTAATGTTGAACCAGAAGAAGAAGTTGGAGAGTGATTTGTCCATGCTGTCTGGAGAAGTGGATGACGCTCAGCAGGAGTGTCGCAATGCTGAAGAGAAGGCAAAGAAGGCCATAACTGATGCAGCCATGATGGCGGAGGAACTGAAGAAGGAGCAGGACACCAGCAGCCACCTGGAGAGGATGAAGAGGAACATGGAGCAGACCATCAAAGACCTGCAGAACCGGCTGGATGAGGCGGAGCAGATTGCTCTcaaggggggaaaaaaacagattCAGAAAATGGAAATTCGGGTGCGGGAACTGGAGACAGAGCTGGACTGTGAGCAGAAGAAGAGTGCAGAGTTCCAGAAAGGAATACGAAAATATGAGAGGAGGATTAAAGAGCTTACCTATCAGACAGAGGAGGACAGGAAAACTCTCCTGAGAATGCAGGACCTGATTGACAAACTTCAGGCTAAAGTAAAGAGCTTCAAGAGACAAGCTGAGGACGCGGAGGAGCAGGTGAACTGCAACATGACTCGGTTCCGAAAGATCCAGCATGATCTGGATGAGGCAGAGGAGAGGGCAGACATGGCTGAATCTCAAGTCAACAAGCTGCGTGTCCGCACCAGAGAGACTCATGTCGTCAAGGTCGTGGAGTGACGACTGACTTAAGCAGATGACTTACTAGAGTCATAGCGTGTGACGAGTACCTTTCCTTCTATTTGGTCTTCGTAAAATGCTGCAAGACACAGTTTTTGGAAATGTTTAATGCTTACTGAATGTCAATGCTTATTTTCAGATGTAAAACTTTAGTCTTCAAAAGTTTTTGTTCTTATGTCTGTCTTGGGACAGGCTCAGTCCGCAGAGCTCCTAATTAGCAGTTTTAATCACAGTGCAGTTACAGTACAGCTGAAGGTTGTTTTTCTTTAGCCTTCTGTAGCATCTGATTTGAAACTGGAGCTTTATGGACAGGTTGTTTGAAAAGTTATTTGGATATTATAAACAAAACAGCACTTAATTGGTAA

Function

GO:

id name namespace
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090311-5 Predicted to enable ATP binding activity; actin filament binding activity; and cytoskeletal motor activity. Predicted to be part of myosin complex. Is expressed in atrium; cardiac ventricle; and heart. Orthologous to human MYH7B (myosin heavy chain 7B).

Ensembl:

ensembl_id ENSDART00000137438

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042874 lncRNA upstream 31233 18688354 ~ 18691482 (+) False XLOC_021600
TCONS_00042876 lncRNA upstream 31233 18688725 ~ 18691482 (+) True XLOC_021600
TCONS_00044809 lncRNA upstream 586421 18134562 ~ 18136294 (+) False XLOC_021597
TCONS_00044810 lncRNA upstream 586421 18134759 ~ 18136294 (+) False XLOC_021597
TCONS_00044670 lncRNA upstream 586547 18135571 ~ 18136168 (+) True XLOC_021597
TCONS_00044811 lncRNA downstream 167392 18924470 ~ 18929002 (+) True XLOC_021604
TCONS_00042882 lncRNA downstream 294407 19051485 ~ 19066987 (+) True XLOC_021606
TCONS_00042883 lncRNA downstream 348468 19105546 ~ 19119441 (+) False XLOC_021607
TCONS_00042886 lncRNA downstream 420813 19177891 ~ 19180438 (+) False XLOC_021608
TCONS_00042889 lncRNA downstream 420813 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042873 mRNA upstream 179356 18527235 ~ 18543359 (+) True XLOC_021599
TCONS_00042871 mRNA upstream 179357 18527028 ~ 18543358 (+) False XLOC_021599
TCONS_00042870 mRNA upstream 179357 18527028 ~ 18543358 (+) False XLOC_021599
TCONS_00042872 mRNA upstream 179357 18527208 ~ 18543358 (+) False XLOC_021599
TCONS_00042867 mRNA upstream 577482 18134313 ~ 18145233 (+) False XLOC_021596
TCONS_00042880 mRNA downstream 21965 18779043 ~ 18794561 (+) True XLOC_021603
TCONS_00042881 mRNA downstream 187310 18944388 ~ 18951148 (+) True XLOC_021605
TCONS_00042884 mRNA downstream 349070 19106148 ~ 19119443 (+) False XLOC_021607
TCONS_00042885 mRNA downstream 349110 19106188 ~ 19118600 (+) True XLOC_021607
TCONS_00042891 mRNA downstream 425741 19182819 ~ 19187816 (+) True XLOC_021609
TCONS_00042875 other upstream 31233 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042869 other upstream 433514 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042854 other upstream 848568 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042853 other upstream 849117 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042843 other upstream 939174 17783413 ~ 17783541 (+) True XLOC_021584
TCONS_00042887 other downstream 420813 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042896 other downstream 460450 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042898 other downstream 802996 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042916 other downstream 1038360 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042917 other downstream 1044058 19801136 ~ 19808251 (+) True XLOC_021623

Expression Profile

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