RNA id: TU1355053


Basic Information

Item Value
RNA id TU1355053
length 1994
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G1188146
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54453146 ~ 54455169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAATGCTGATTTAATTTGGCATTTTCACTCCAACAATGGCAGACATGTTGGCAAAAGGAGACAATTGCAAAACTGAAAATGGAATATCATAAAACAAACTATTCTTGCATTCAGGATGGCATGTTAGAAATGAAATCGTAACAGTAAAAGGCATCGTCAGGCGAGACTGCAAAATAATCTGTTCACTTTTGCACAAAACCCTCTTCACTTAATTTTAAACAGCTTGCATTAGACAAAATACTGTACATTCTTGGGGTTTTTGATGTACAATGAACAGTACAAAAATAAACCTGAAGTAAACGTATTtcacttaaaaaataaaatatgaacaaACTATAACAGttaattgatgtaataaatgaaGACCTATTTAACTGCCAATCATTATACAGACAATATGATTGAATAAAACATGTTGCATTGGATCATCATTCATCAAAGTTATGATGAGAGAAAACACCATTCTGACAGCAAAACCCAGAATGTGAAGTGAATGCTTTCTGTAAATCATCCTGTCATGACTTATAGCTGAACCAGTTTTAGTAAAGGCCTCGTGAGTCAGAGGTCAAGCAAACAAGACTTTGGGTGATGTCCTGCAATAAAAACACAAACAGATCACATATTGCCTTGTGCCTTATGTACAGCACAAAGCTATCAGAGATAAGTAGAAAAGATAAACACATTCTGCTTTTACCAGTGTTCAGTTCAAACACCCTTTGGACTATCTGTCCTCGCCTGCACAGGAAGACAGGCACTGAAATAGTACTGATTCAAGAGAGAAAATCAGCATCTGCAGCAGCAAGCAAAACTATTCCAGACACATCTACCCTCACAGAGCTCACATACATAACACAGTGTTATTTAAAAAGGCACATTGGCCACATCCCATGATTTTCAAAGATAGTCATTATCAAGTCGTCACCTATACAATAATATACACCTCTTTACAGTGAATAGGCTCATTAAGAGAAATAAGATTCCACAGTAAAAATACCATTGTCGACTTGTCTTTCAACAACATCAACAGAAGAATTCCTCCCTTGCTTTGCCAAGTATTTTGTGCCCAACAATACTTGAATACCTCACAATACTTGACATTAGGAGGGACTCCATTGCAAATAAAACAGATTCTCTCTGTACTACACATTACGGCCCCCACTAGTTCATTTCAGCCCTGGCTTCTTGATGCTTCGAGGGACATTGGGACGATTCCATTCGGAGCCATTTTGTCTCAGTCGAGCAGGAAAGGCACTTGGTTTGGGCTGCTGCTCCCCACTGTCGGCAGCTCCCAGGCACTGCAGGCCTGGTCCTCACCAGCACAGGACAGAGCAACAGAGCAACAGTATGTGTCCACTTGTAAGGCAATGCTCCTCTGTGCAGCACTCATCCACCACCCCTCGTCGGCTCTCAGGCAGGCTCCGTGTCCGGTGTGGCTGGATGTGGCACAGGCAGTATGTGTGGCTCAGGTGGGATGGGATCTGTAAGGGGGGTTTCTGACTGTGTGGGGGGTTCTGAGGGCAACACTGTCTGTGGAGGCAGGTCTGGCAGTGTGGATGAGGGTGATGTAGGCTGTACTGGTTGAACTGGTAATGATGTGGATGATACTGTCTCTGCTGGTAATGTGGTTGGCACTGACTGTATGGGTGTGGAGTCTGATACGGTCACTGACTGTATGGGTGCTGTGGATGGAATTGTGTTTGACACCTCAGGGTGTGAGGGTACTGTGTTTGACGATGTGGGTTCCTCTGGCTGCGACGTGTGTGTCTGCAGCGGGGGGGTGGTCTCGGGGTGTGTGTAGGGAGTCCGTATCCAGGAGAGCTGCTCTGAGCTAGAGTAGTAGGGAAGGAATGACCTCTCGTGGGCACAGGTGCGCATGGCCAGGTAGGTGTGGCGCAGCAGGTGGGGGAAGCGGGAGGTGAAGTAGGAGACAAAGTCATCAGGGATGGAGCCCAGAGTCTCCTGGACCTCTGCTGGTAACTCCCTGTAATGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355017 lncRNA downstream 25716 54426445 ~ 54427430 (-) False LOC110538769
TU1355018 lncRNA downstream 25716 54426445 ~ 54427430 (-) False LOC110538769
TU1355019 lncRNA downstream 25716 54426445 ~ 54427430 (-) True LOC110538769
TU1355011 lncRNA downstream 55516 54397276 ~ 54397630 (-) True G1188115
TU1355002 lncRNA downstream 104816 54348130 ~ 54348330 (-) True G1188106
TU1355035 lncRNA upstream 2441 54457610 ~ 54549633 (-) True G1188128
TU1355031 lncRNA upstream 9945 54465114 ~ 54465805 (-) False G1188127
TU1355063 lncRNA upstream 57009 54512178 ~ 54517142 (-) True G1188155
TU1355071 lncRNA upstream 68529 54523698 ~ 54524645 (-) True G1188161
TU1355037 lncRNA upstream 86776 54541945 ~ 54593120 (-) True G1188130
XR_002475811.2 mRNA downstream 25695 54426436 ~ 54427451 (-) False LOC110538769
XR_005035602.1 mRNA downstream 25697 54426436 ~ 54427449 (-) False LOC110538769
XR_005035819.1 mRNA downstream 26742 54426263 ~ 54426404 (-) True LOC118938612
XM_036941514.1 mRNA downstream 403554 53806640 ~ 54049592 (-) False si:ch73-374l24.1
XM_036941513.1 mRNA downstream 649794 53793576 ~ 53803352 (-) True cacng5b
XM_036941540.1 mRNA upstream 281545 54736714 ~ 54740723 (-) True LOC118938329
XM_036939769.1 mRNA upstream 286310 54741479 ~ 54748709 (-) False LOC110486825
XM_036941548.1 mRNA upstream 357953 54813122 ~ 54831352 (-) False LOC110485228
XM_036941552.1 mRNA upstream 377941 54833110 ~ 54862652 (-) False LOC110486827
XM_036941549.1 mRNA upstream 377941 54833110 ~ 54889445 (-) False LOC110486827
TU1355055 other downstream 3126 54448883 ~ 54450020 (-) True G1188147
TU1354775 other downstream 642389 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1354707 other downstream 815333 53607024 ~ 53637813 (-) True mosmoa
TU1353318 other downstream 1793337 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 2422486 52025918 ~ 52030660 (-) True G1186381
TU1355033 other upstream 10364 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 144232 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 289256 54744425 ~ 54748658 (-) True LOC110486825
TU1355147 other upstream 368743 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other upstream 368743 54823912 ~ 54831322 (-) True LOC110485228

Expression Profile