RNA id: TU1354403


Basic Information

Item Value
RNA id TU1354403
length 281
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1187583
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54660285 ~ 54660565 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagtcctcatactggactggagtcctcacactggactggagtcctcacactggactggagtccTCACACTGGACCAGAAGATTTGGATGCAGGTGATAGATGATTCTTTTGATTCCCTGGGTCCCGATCACAATGTGGTTACAGATACCAAATCAAATctatgtagtgaaatgcttgtttctagctccaacagtgcagtagtatctaacaattcacaccatacacacacatctaaaagtaaaataatataataaaaacatatataaataTCAGGACGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354402 lncRNA upstream 1881 54657706 ~ 54658404 (+) True G1187582
TU1354399 lncRNA upstream 11504 54648558 ~ 54648781 (+) True G1187579
TU1354389 lncRNA upstream 47371 54610844 ~ 54612914 (+) True LOC118938328
TU1354390 lncRNA upstream 57717 54602241 ~ 54602568 (+) True G1187571
TU1354319 lncRNA upstream 227139 54427602 ~ 54433146 (+) True LOC110538772
TU1354404 lncRNA downstream 1260 54661825 ~ 54662314 (+) True G1187584
TU1354405 lncRNA downstream 11994 54672559 ~ 54672973 (+) True G1187585
TU1354406 lncRNA downstream 13718 54674283 ~ 54674486 (+) True G1187586
TU1354407 lncRNA downstream 20720 54681285 ~ 54681503 (+) True G1187587
TU1354422 lncRNA downstream 72527 54733092 ~ 54733593 (+) True G1187597
XM_036939767.1 mRNA upstream 4422 54655147 ~ 54655863 (+) True LOC118938094
XM_036941536.1 mRNA upstream 20543 54614037 ~ 54639742 (+) True LOC110515422
XR_005035603.1 mRNA upstream 46849 54599341 ~ 54613436 (+) False LOC118938328
XM_036941537.1 mRNA downstream 40540 54701105 ~ 54710557 (+) True LOC110486813
XM_036941538.1 mRNA downstream 57045 54717610 ~ 54720302 (+) True LOC110486816
XM_036941539.1 mRNA downstream 60096 54720661 ~ 54731365 (+) True LOC110486811
XM_036941541.1 mRNA downstream 95317 54755882 ~ 54810128 (+) False LOC110485227
XM_036941545.1 mRNA downstream 95318 54755883 ~ 54808099 (+) False LOC110485227
TU1354165 other upstream 359972 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 395257 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 462270 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 466147 54188567 ~ 54194138 (+) False G1187452
TU1353930 other upstream 1210569 53446423 ~ 53449716 (+) True LOC110538743
TU1355296 other downstream 333109 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 333109 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 333109 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 460696 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 680159 55340724 ~ 55366316 (+) True LOC110539040

Expression Profile