RNA id: TU1354405


Basic Information

Item Value
RNA id TU1354405
length 415
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1187585
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54672559 ~ 54672973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttgttgtctcctctacactgtgactctgaagatgcagcagtaacatggtctggttgttgtctcctctacactgtgactctgaagatgcagcagtaacatggtctggttgttgtctcctctacactgtgactctgaagatgcagcaacatggtctggttgttgtctcctctacactgtgactctgaagatgcagtaacatggtctggttgttgtctcctctacactgtgactctgaagatgcagcaacatggtctggttgttgtctcctctacactgactGGAAcaatgcagcagcaacatggtctggttgttgtctcctctacactgactGGAACaatgcagcaacatggtctggttgttgtctcctctacactgactGGAACaatgcagcaacatggtctggttgttgtctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354404 lncRNA upstream 10245 54661825 ~ 54662314 (+) True G1187584
TU1354403 lncRNA upstream 11994 54660285 ~ 54660565 (+) True G1187583
TU1354402 lncRNA upstream 14155 54657706 ~ 54658404 (+) True G1187582
TU1354399 lncRNA upstream 23778 54648558 ~ 54648781 (+) True G1187579
TU1354389 lncRNA upstream 59645 54610844 ~ 54612914 (+) True LOC118938328
TU1354406 lncRNA downstream 1310 54674283 ~ 54674486 (+) True G1187586
TU1354407 lncRNA downstream 8312 54681285 ~ 54681503 (+) True G1187587
TU1354422 lncRNA downstream 60119 54733092 ~ 54733593 (+) True G1187597
TU1354423 lncRNA downstream 62074 54735047 ~ 54735375 (+) True G1187598
TU1354426 lncRNA downstream 66246 54739219 ~ 54742448 (+) True G1187601
XM_036939767.1 mRNA upstream 16696 54655147 ~ 54655863 (+) True LOC118938094
XM_036941536.1 mRNA upstream 32817 54614037 ~ 54639742 (+) True LOC110515422
XR_005035603.1 mRNA upstream 59123 54599341 ~ 54613436 (+) False LOC118938328
XM_036941537.1 mRNA downstream 28132 54701105 ~ 54710557 (+) True LOC110486813
XM_036941538.1 mRNA downstream 44637 54717610 ~ 54720302 (+) True LOC110486816
XM_036941539.1 mRNA downstream 47688 54720661 ~ 54731365 (+) True LOC110486811
XM_036941541.1 mRNA downstream 82909 54755882 ~ 54810128 (+) False LOC110485227
XM_036941545.1 mRNA downstream 82910 54755883 ~ 54808099 (+) False LOC110485227
TU1354165 other upstream 372246 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 407531 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 474544 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 478421 54188567 ~ 54194138 (+) False G1187452
TU1353930 other upstream 1222843 53446423 ~ 53449716 (+) True LOC110538743
TU1355296 other downstream 320701 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 320701 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 320701 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 448288 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 667751 55340724 ~ 55366316 (+) True LOC110539040

Expression Profile