RNA id: TU1355213



Basic Information


Item Value
RNA id TU1355213
length 341
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1188270
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54845460 ~ 54848306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atcaaaatatattttatatttgagattcttcaaagtaatcaCCCTttgctttgatgacagctttgcacactcttggcattctctcaaccagatacacctggaatgcttttccaacagacttaaaggagttcccacatatgctgagcacttgttggctacttttccttcactctgcggtccgactcatcccaaaccatctcaatttgattgaggttgggtgattgtggagtcctggtcatctgatgcagcactccatcactctccttcttgataaaatagcccttactcagcctggaggtgtgttgggtcattgttctgttgaaaaacaaatgatagtccca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1355146 lncRNA downstream 11808 54809618 ~ 54833652 (-) True LOC110486827
TU1355201 lncRNA downstream 27946 54816985 ~ 54817514 (-) True G1188259
TU1355198 lncRNA downstream 28994 54814810 ~ 54816466 (-) True G1188257
TU1355196 lncRNA downstream 39705 54803954 ~ 54805755 (-) True G1188256
TU1355189 lncRNA downstream 42927 54800949 ~ 54802533 (-) True G1188252
TU1355218 lncRNA upstream 5799 54854105 ~ 54854476 (-) True G1188275
TU1355225 lncRNA upstream 20261 54868567 ~ 54873998 (-) True G1188281
TU1355260 lncRNA upstream 83418 54931724 ~ 54974451 (-) True G1188311
TU1355277 lncRNA upstream 127890 54976196 ~ 54976771 (-) True G1188327
TU1355293 lncRNA upstream 144220 54992526 ~ 54992792 (-) True G1188342
XM_036941548.1 mRNA downstream 14108 54813122 ~ 54831352 (-) False LOC110485228
XM_036939769.1 mRNA downstream 96751 54741479 ~ 54748709 (-) False LOC110486825
XM_036941540.1 mRNA downstream 104737 54736714 ~ 54740723 (-) True LOC118938329
XR_002475811.2 mRNA downstream 418009 54426436 ~ 54427451 (-) False LOC110538769
XR_005035602.1 mRNA downstream 418011 54426436 ~ 54427449 (-) False LOC110538769
trnaa-ugc-61 mRNA upstream 7229 54855535 ~ 54855610 (-) True trnaa-ugc-61
XM_036939770.1 mRNA upstream 41299 54889605 ~ 54890333 (-) True LOC118938095
XM_036941554.1 mRNA upstream 46760 54895066 ~ 54907283 (-) False LOC110486831
XM_036941555.1 mRNA upstream 46760 54895066 ~ 54907473 (-) True LOC110486831
XM_036941559.1 mRNA upstream 84860 54933166 ~ 54938783 (-) False LOC110486844
TU1355147 other downstream 14138 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other downstream 14138 54823912 ~ 54831322 (-) True LOC110485228
TU1355133 other downstream 96802 54744425 ~ 54748658 (-) True LOC110486825
TU1355100 other downstream 245011 54599401 ~ 54600449 (-) True G1188186
TU1355033 other downstream 374622 54465533 ~ 54470838 (-) True G1188127
TU1355395 other upstream 174342 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other upstream 174704 55023010 ~ 55026448 (-) True LOC110486836
TU1355681 other upstream 363193 55211499 ~ 55212715 (-) True LOC110516592
TU1355745 other upstream 586510 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 586835 55435141 ~ 55455234 (-) True LOC110485238

Expression Profile