RNA id: TU1355297


Basic Information

Item Value
RNA id TU1355297
length 1107
RNA type TUCP
GC content 0.41
exon number 3
gene id G1188344
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54993674 ~ 54997295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTATATATATAAACAAGTATTTGCAATAAATGAATGTGAACCCCCAGAGGACATGCCTGAAACTCAATatgctatcaaatcaaatcaaagttgatttaTTTCACTTGACCATTTGTGATTGACCACAACTCTCTCTTGACTAAAGATCCTAGAGATCAAACCAACACATTATTCCAATGGTATTTATTGTAATgttgacaaacaaacaacacCAGTCAAATTGAGGAATTAGTTGACAACCTGCTTCAAAAGCACTAGGACAATGCATGTTTGTGTTCCGTCCCCTAATCCCATACCTTACACTGCCACCTTTGAACTCTCCCTCTCTGATCCTCTGTCCTTTGAAATGAGCTACTCCACACCTGCTCCACAGAAATATAAAGAACTAGAGACCCCCAATCCTTCCTTTGTTTGGGATTCCTCTGGAGCAGTGGCTGTAGGTGTTTAACACACATCTGCTCAGCAGTGTTGTTTAGGgtttggtactgtactgtactaatctaccatgctggtgttggtactgtactatactatactgtactactctactaTCCTAGTGTTGGTACtatgctgtactgtactatactgtactactttaCAATGCTGGTGTTGgtattgtactatactgtactactctaccatgctggtgttggtactgtactatactgtactactgtaccatgctggtgttggtactgcactgtactgtactactctaccatgctggtgttggtactatactgtactgtactactctaccatgctggtgttggtactatactgtactactctaccatgctggtgttggtactatactgtactgtactactctaccatgctgttgttggtactgtactatactgtactactctaccatgctggtgttggtactatactgtactgtactactctaccatgctgttgttggtactgtactatactgtactactctaccatgctggtgttggtactatactgtactgtactactctaccatgctggtgttggtactatactgtactactctaccatgctggtgttggtactatactgtactactctaccatgctggtgttggttctatactgtactgtactactctacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355284 lncRNA upstream 8894 54984466 ~ 54984780 (+) True G1188334
TU1355281 lncRNA upstream 11200 54982232 ~ 54982474 (+) True G1188331
TU1355278 lncRNA upstream 13785 54979619 ~ 54979889 (+) True G1188328
TU1354483 lncRNA upstream 158291 54833998 ~ 54835383 (+) True G1187645
TU1354474 lncRNA upstream 166716 54826415 ~ 54826958 (+) True G1187638
TU1355294 lncRNA downstream 3189 55000484 ~ 55002271 (+) True G1188343
TU1355307 lncRNA downstream 16573 55013868 ~ 55016506 (+) True G1188347
TU1355325 lncRNA downstream 26128 55023423 ~ 55025430 (+) False G1188352
TU1355326 lncRNA downstream 26128 55023423 ~ 55026525 (+) True G1188352
TU1355329 lncRNA downstream 30409 55027704 ~ 55028092 (+) True G1188355
XM_021558671.2 mRNA upstream 53183 54939020 ~ 54940491 (+) True LOC110486846
XM_036941557.1 mRNA upstream 60252 54925567 ~ 54933422 (+) False narfl
XM_036941558.1 mRNA upstream 60252 54925567 ~ 54933422 (+) True narfl
XM_036941556.1 mRNA upstream 68233 54907568 ~ 54925441 (+) True LOC110486830
XM_036941542.1 mRNA upstream 183546 54756241 ~ 54810128 (+) False LOC110485227
XM_036941571.1 mRNA downstream 343407 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA downstream 343407 55340702 ~ 55394765 (+) False LOC110539040
XM_036941586.1 mRNA downstream 427570 55424865 ~ 55433209 (+) False LOC110538788
XR_005035606.1 mRNA downstream 427570 55424865 ~ 56123584 (+) False LOC110538788
XR_005035607.1 mRNA downstream 427570 55424865 ~ 56123584 (+) False LOC110538788
TU1354165 other upstream 693361 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 728646 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 795659 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 799536 54188567 ~ 54194138 (+) False G1187452
TU1353930 other upstream 1543958 53446423 ~ 53449716 (+) True LOC110538743
TU1355362 other downstream 123966 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 343429 55340724 ~ 55366316 (+) True LOC110539040
TU1356156 other downstream 941177 55938472 ~ 55939357 (+) True G1189040
TU1356992 other downstream 1839121 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 1880633 56877928 ~ 56925607 (+) True G1189675

Expression Profile