RNA id: TU1355390


Basic Information

Item Value
RNA id TU1355390
length 2757
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G1188399
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54999533 ~ 55002316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acaatttctaagatgttactgagttacagttcatatgaggaaatcagtcaatttaaatgcattcattaggccctaatctatgaatttcacatgactgggaatacagatttgTATCTGTTGGTcaaactctccctcaatgtgagcaagacaaaggagatgattctggactacaggaaaaggagggccgaacacgccaCCATTCAcatcgaaggggctgtagtggagcaggtcgagagtttcaagttccttggtgtccacatcaccaacaaactaacatggtccaaacacatcaacacagtcctgaagagggcacaacaaaacctttccccctcaggaaactgaaaagatttgtcatgggtcccagatcctcaaaaagttatacagctacaccatcgagagcggTTCTATCAcatcctggtatggcaactgctcggcctccgaccataaggcgctacagggggtagtgcgtacgcccagtacatcactgggacaaagcttcctgccatccaagacctataCGCTAGACAGTGTctgaggaaggcccaaaaaattgtcaaagactccagtcacccaagtcatagactgttctctctgctaccgcacggcaagcggttccggagctccaagtctaggtccaaaaggctccttaattaACAGCTtccatccccaagccataagactgctgaacaattaatcaaatggtcacCCGGACTGTTTACATTGACTTCccccttttgtttttacactgctgctactgtttgttatctatgcatagtcactttacccccacctgtacccccgcacattgacttggtaccggtaccccctgtatatagcctcgttattgttattttattgttacttttattaaattttttccgttagtttatatagcaaatattttcttaactctatttcttgaactgcattgttggttaagggcttgtaagttagcatttcacggtaagatctacacctgttgtattcggcgcatgtgacaaataacatttgatttgatttgatggtaaagaaattaacatgaaattctctggcaaagctctggtggacattcctgcagtcagcatggcaattgcacgctccctcaaaactttaacatttgtggcattgtgttgtatgacaaaaaaatgtaattttagagtggccttttattgttcacagcacaaggtgcacctgtgtaatgatgttTAATCAAAGTaatgatgtttaatcagcttctacatatgtcacacctgtcaggtggatggattatcttggcaaaggagaaatgctcactaatagggttGTAAAAAAACATGTgctcaacatttgagagaaataacctTGTGCGTGTGGAAcacttctgggatcttttatttcagctcatgaaacatgggaccaacactttacatgttgcgttcacattattgttcagtgtacatttacAGAACTTCTGATCATTTTCTTGCCTTAGTACCCGTTCATGGACTATTAACACATTGTTTTCATCAGAAGAGAAATGTGTGAAATTTCCCGGCAATCAGTAAATACTACTGGGCAAAATTCTAAATCATCCCATCAGTGTCATACTATGTACAATATATGGGAAGATCTAGACAATGGGGACTGTCTAAttgttatgattttttttttttgcagtattgcgGACATGCAGAGACGCAAACAATTAAGTTGGGTTCCTTTTCATCTCCCACATTGTGACCTTCCAGTATAGAGCTTTGCTTTGGTGTGGATTTAGACTTATATGTTCACATCAGTTGTGTTTCTCCATTGTATTCACTTTTCCATGACCTATTGTGAATTGTGTTTCTGTGCAGCtatggaaagtttttttttaaactatcaGCTAACCAACTTTTGAATTGAATACATGGAATTGGATTGTGATGATACCGATGAATGAGTCCTGCACACAATGTGCTTATTTTTTTTCAATGTTTTTACCAGGAATTATATTTGATTTCCTGTGTATGAAATTGTTTGGTGAAATAGTATTTGCCCATCATTCCACAGCTTTAGATAGTTGTGCTTCCAATTTTAATCATCAGGATTTAGTgaccaaaaaatataaatataaataaatgtgttGATCTACTGGGATTTTTAAAATACTTTTAACTTCCTGTTTTGTCTGCTTGGACTCGGGAGATAAGTATGGTTGTGTTAATGTTCTTGCAGGCAGTCATGTtcttttgatgaatttatttatGTTTTGAGAAGGCAACTTCACCTTGAAAACCTTTGCAAAAGCCCACAAAGTTCTGTTTCTTGTGGATTCTTGTTAtgaaaatcaacaaaaaatgctTGTACCGGATTGAGATAGACTGTAATAAACTATGAACTGTGGTACTCTAGTAATCTAAACATTTCAATAACTAAGTGGATGGAAAAAGCTTACTGACCGCGACTGGACAGAATATAGTGGTCAGGAGGACAGGCAGGCTAGCTCTCACCAGCTCTGCATACTGTAACAATCCCAAACCTTCCACCTTCCATGAAGAGTGCAGTTACAGCTTTTCACCTGTTGATGGTGCTGCCCACTGTGATAATATTAGTCCCTTGTAGATCGAGATCCATGCTTTCTttgtaacctacagtatgttaagcGTTTGGCTGATGGAAGATTTGTACATGAGAGGATGTATTTTGGTGTTTATTGTAACCTCAATCAATCAAAGGCCATGTGACCACAATGTATCTGACATGGAGATGGTATCAGAGATGAGTCAAGCCACTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355293 lncRNA downstream 6741 54992526 ~ 54992792 (-) True G1188342
TU1355277 lncRNA downstream 22762 54976196 ~ 54976771 (-) True G1188327
TU1355260 lncRNA downstream 25082 54931724 ~ 54974451 (-) True G1188311
TU1355225 lncRNA downstream 125535 54868567 ~ 54873998 (-) True G1188281
TU1355218 lncRNA downstream 145057 54854105 ~ 54854476 (-) True G1188275
TU1355393 lncRNA upstream 10630 55012946 ~ 55013237 (-) True G1188402
TU1355398 lncRNA upstream 16674 55018990 ~ 55019272 (-) True G1188404
TU1355402 lncRNA upstream 24804 55027120 ~ 55027376 (-) True G1188408
TU1355410 lncRNA upstream 35438 55037754 ~ 55038280 (-) True G1188412
TU1355476 lncRNA upstream 159788 55162104 ~ 55162455 (-) True G1188459
XM_021556291.2 mRNA downstream 23726 54946361 ~ 54975807 (-) True LOC110485232
XM_021558668.2 mRNA downstream 60698 54933166 ~ 54938835 (-) True LOC110486844
XM_036941559.1 mRNA downstream 60750 54933166 ~ 54938783 (-) False LOC110486844
XM_036941555.1 mRNA downstream 92060 54895066 ~ 54907473 (-) True LOC110486831
XM_036941554.1 mRNA downstream 92250 54895066 ~ 54907283 (-) False LOC110486831
XM_036941560.1 mRNA upstream 1644 55003960 ~ 55011294 (-) False LOC118938330
XM_036941561.1 mRNA upstream 1715 55004031 ~ 55011294 (-) True LOC118938330
XM_021558657.2 mRNA upstream 11539 55013855 ~ 55016528 (-) True LOC110486834
XM_036941562.1 mRNA upstream 20303 55022619 ~ 55026465 (-) False LOC110486836
XM_036941563.1 mRNA upstream 27221 55029537 ~ 55159189 (-) False LOC110514491
TU1355147 other downstream 168211 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other downstream 168211 54823912 ~ 54831322 (-) True LOC110485228
TU1355133 other downstream 250875 54744425 ~ 54748658 (-) True LOC110486825
TU1355100 other downstream 399084 54599401 ~ 54600449 (-) True G1188186
TU1355033 other downstream 528695 54465533 ~ 54470838 (-) True G1188127
TU1355395 other upstream 20332 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other upstream 20694 55023010 ~ 55026448 (-) True LOC110486836
TU1355681 other upstream 209183 55211499 ~ 55212715 (-) True LOC110516592
TU1355745 other upstream 432500 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 432825 55435141 ~ 55455234 (-) True LOC110485238

Expression Profile