RNA id: TCONS_00042883


Basic Information

Item Value
RNA id TCONS_00042883
length 2214
lncRNA type sense_over
GC content 0.38
exon number 3
gene id XLOC_021607
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19105546 ~ 19119443 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAATCTTCCCAacaagaatgtaaagcatttattttatttgatgtgaTTTTCTacgtaaaaaataattattactccaattattatttttcaccatttttcCATGCATTGTTTACAACTTGACTTGTAGGACTTATGAAAAagtacacaaaaataaagtttgttgtgagaAAATTACTTAGAGTACTATAATTGTATGTGAAGAAATGTATTGTAGATAATATTTATTCCCTCAACTCAATACGAAACAGTGATAAATccttaatgataaaaaaacaacaacaaatgtctgaaaatattgaagcaactgaacaatatatatttacaaatacaattaaaaaaatacaacagaattattgcattaaatcaaaaatctagtacgtttaatatttcatataataatctATTCAATCACAGCctaatattttatagtagaaaaatagtttaaattacaatttagaagcagctgaaatcaggttagtcgatcttttaaacagcaggtggcactgtgaaggtctggaagtgcaggtctagcCGTCTGCTAGTATGAGTTTACACACTCAGAACATGCCGCACCTGTAGGGGGCGATGGATCAAATCCACTGTGAGAAATTTACTGTGGAAGAAGAGACTGATAGAAACAACGAACACTAAAGTCTTTTATCATGGCGACAGTCCAAGACTCTGGTCGTGTTCCCGTTGAGACCTGGATCTCGGTGTGTCCCGGTGGTCTGTGGGAGGTGCGCCGAAAGCGGCTTGGAGAAAGAAGTCGAGGAGACACCACGCCTATGATGGGCTCTCTATGTAAAGTCAAGGTGCGGAGAAAGACTGTCACGGAGGAAAACACACTGCCTACATCTTCTCCAGAGCAAGAATCAACAGCTGTTGTTAACTGTAGCGAGCAAACTACCTCATATCCCCGCTCGCAGGAGTCTGTGCTGCAGGTTCCTCTAGATGAGTGGCTGGTGTTGCGCATGGGCGAGGGCCAGTGTGACATTACTGAGGGCTGCTTGGAGGGCATAAGGGCTGGAGAGATGTGTGAGttcacAGTAAGTGCCTGGAATGCAGCTTGCAGTGATGTTGATGGTACCCAAACTAAAAATACAACATCGCAAGCATCGTCTCAGACCGACTGCTTTACACTGGAGCTTCATTCTTTAACCCCGGGGCAAGAGTCTTGGCAGATGACAGCTGAAGAGAAGTGGGCTTGGGTTCTGTCTCACAAACAAAGAGGTGGTCTGCGGTTTGGAAAAGGAGATATCTGGGGTGCGGCAGACTGTTACTGCAGAGCTGTAAAACTGGCAATAACTTTACAGGTTCAGACAAGAGGAAAACTAGTAGACGAGACGCTTAAAGAAGATGAGGaaaatgaagatgaagatgaggatgaagaCGAAGGTGCAGAAAGTCCAAATGACTCCACCATTCCAAATGAAGAGTACAAAACTGTAAAAGCAGAACTTCACTGCAATCTCTCTTTATGCCAACTGAAGTTAGGCCAGCTCGGTAAATCCAAAGACAGCAGTATCAAGGCCACAGAGTTAAACCCAAAGAGCACAAAGGCATGGTACCGGCATGGGCAAGCGTGTCTGCAGCTTGGCGAACTGGAGGAATCCCGCATGGCCTTTGGAAAAATTCTGGAACTCCAACCTGATTCTGCTTCAGCTCGCACTGCTCTGAAACAAGTGAACTCGAAGTTAAAAGACCTAGACAGTAAACTTGGTCAAAGGCTGAGCAAGATGTTTAACTAGGAATTAACTCAAATaattatttcataaataatattgTGAAACAGATTCCTGTGAAGTGCCCATAAGTAATGTTTTTAGTCTTACTTGTAGTCCAATTTCAGATTTTAAAGCCTAAGTATGTTTACTGTATGGGTAGTATGTATACTATCATCAATGTTTAATGTTGTGATTTGTTAATGCATATTTCTGTATAAACTTGAAAGCTGTGGGAAATCACAAGACTATTAGGACATTTGCTGAATGTACCactaaatctttattttatttttgtaaaaaaagagTATATTACTTTAATGTTTTGTTCTaaaacatgctttttttattCTGGATTTATAACTGCTGTTGAAAATTGTCTAAATCTATGTTGCTCATTATTGCATAAACTAGTAATaaacaatgttatttataaaCGTTTTtgctttttctatttttatttagtaataaaaCATGGATTCATATAAGT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0042393 histone binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042882 lncRNA upstream 38559 19051485 ~ 19066987 (+) True XLOC_021606
TCONS_00044811 lncRNA upstream 176544 18924470 ~ 18929002 (+) True XLOC_021604
TCONS_00042874 lncRNA upstream 414064 18688354 ~ 18691482 (+) False XLOC_021600
TCONS_00042876 lncRNA upstream 414064 18688725 ~ 18691482 (+) True XLOC_021600
TCONS_00044810 lncRNA upstream 969252 18134759 ~ 18136294 (+) False XLOC_021597
TCONS_00042886 lncRNA downstream 58450 19177891 ~ 19180438 (+) False XLOC_021608
TCONS_00042889 lncRNA downstream 58450 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042888 lncRNA downstream 58453 19177894 ~ 19182388 (+) False XLOC_021608
TCONS_00042890 lncRNA downstream 59155 19178596 ~ 19179433 (+) True XLOC_021608
TCONS_00042893 lncRNA downstream 78920 19198361 ~ 19200193 (+) True XLOC_021610
TCONS_00042881 mRNA upstream 154398 18944388 ~ 18951148 (+) True XLOC_021605
TCONS_00042880 mRNA upstream 310985 18779043 ~ 18794561 (+) True XLOC_021603
TCONS_00042877 mRNA upstream 348468 18722715 ~ 18757078 (+) False XLOC_021601
TCONS_00042878 mRNA upstream 351107 18722915 ~ 18754439 (+) True XLOC_021601
TCONS_00042873 mRNA upstream 562187 18527235 ~ 18543359 (+) True XLOC_021599
TCONS_00042891 mRNA downstream 63378 19182819 ~ 19187816 (+) True XLOC_021609
TCONS_00042892 mRNA downstream 78803 19198244 ~ 19201328 (+) False XLOC_021610
TCONS_00042894 mRNA downstream 83195 19202636 ~ 19206419 (+) True XLOC_021611
TCONS_00042895 mRNA downstream 94031 19213472 ~ 19221027 (+) True XLOC_021612
TCONS_00042897 mRNA downstream 439133 19558574 ~ 19583814 (+) False XLOC_021615
TCONS_00042879 other upstream 374147 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042875 other upstream 414064 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042869 other upstream 816345 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042854 other upstream 1231399 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042853 other upstream 1231948 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042887 other downstream 58450 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042896 other downstream 98087 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042898 other downstream 440633 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042916 other downstream 675997 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042917 other downstream 681695 19801136 ~ 19808251 (+) True XLOC_021623

Expression Profile

//