RNA id: TU1355762


Basic Information

Item Value
RNA id TU1355762
length 594
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1188696
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55339773 ~ 55340366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacatgcgccgaatacaacaggtgtagactttagagtgaaatgattacttacgaGCCTATACCCGACAATGCAGATTTAAAAAGTAAGAacaatatttgctaaataaaaaagTAGATAGgaacacaataaaaacaataacgagggtatatacaaggagtacctgtaccgagtcaatgtgcaggggtacgaggtagtttaggtaattgaggtaacacAGTATGTACTGGTAGGTAGCTAGTgataaaagtgactaggcaatcaggatatataactgcgtagcagcagtgtgtgtgtgagtgtgcctatgtgtgtgtgtgtatgtcatcattatgcatgtgtgtgagtttatgtagtatgtgtgtgatggagtgtcagtgtagtatgcgCAAGTTTacgtagtatgtgtgtgttggagtgtcagtgtagcaTGTGTGAGTTTACATAATATGTGTGtgctggagtgtcagtgtagtatgtgtgagtttatgtagtatgtgtgtgttggagtgtcagtgtagtatgtgtgagtttatgtagtatgtgtgtgttggagtgtcagtgtagtatgtgtgagtttaTGTAGTATGTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355759 lncRNA downstream 12419 55327073 ~ 55327354 (-) True G1188693
TU1355730 lncRNA downstream 34887 55304637 ~ 55304886 (-) True G1188675
TU1355724 lncRNA downstream 51559 55284446 ~ 55288214 (-) True G1188669
TU1355688 lncRNA downstream 85291 55243545 ~ 55254482 (-) True G1188638
TU1355680 lncRNA downstream 128440 55209692 ~ 55211333 (-) False LOC110516592
TU1355783 lncRNA upstream 31833 55372199 ~ 55372529 (-) True G1188717
TU1355739 lncRNA upstream 89368 55429734 ~ 55432178 (-) False G1188682
TU1355741 lncRNA upstream 89368 55429734 ~ 55432178 (-) False G1188682
TU1355742 lncRNA upstream 89368 55429734 ~ 55432178 (-) False G1188682
TU1355743 lncRNA upstream 89368 55429734 ~ 55432178 (-) True G1188682
XM_021558678.2 mRNA downstream 15463 55321599 ~ 55324310 (-) False pvalb1
NM_001195410.1 mRNA downstream 16436 55321871 ~ 55323337 (-) True pvalb1
XM_021558675.2 mRNA downstream 23039 55312290 ~ 55316734 (-) True LOC110486849
XM_036941566.1 mRNA downstream 46342 55289150 ~ 55293431 (-) True aimp2
XM_036941567.1 mRNA downstream 46353 55289150 ~ 55293420 (-) False aimp2
XM_036941576.1 mRNA upstream 54498 55394864 ~ 55418872 (-) False LOC110519575
XM_036941577.1 mRNA upstream 54498 55394864 ~ 55419060 (-) False LOC110519575
XM_036941575.1 mRNA upstream 54498 55394864 ~ 55419061 (-) False LOC110519575
XR_005035605.1 mRNA upstream 55500 55395866 ~ 55419061 (-) True LOC110519575
XM_036941579.1 mRNA upstream 94770 55435136 ~ 55509918 (-) False LOC110485238
TU1355681 other downstream 127058 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 313325 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 313325 55023010 ~ 55026448 (-) True LOC110486836
TU1355147 other downstream 508451 54823912 ~ 54831322 (-) False LOC110485228
TU1355745 other upstream 94450 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 94775 55435141 ~ 55455234 (-) True LOC110485238
TU1356467 other upstream 571858 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 571881 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 571881 55912247 ~ 55915885 (-) False G1189279

Expression Profile