RNA id: TU1355741


Basic Information

Item Value
RNA id TU1355741
length 2322
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G1188682
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55429734 ~ 55432178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTGACTACATGAAACAGAAGGCGCTTCAGAAGTGGCAGAACTGAACAATTCCCAGGTGTGGCGCAATTGGAATTTAACATCGAGCACAAAATCTACTTGTGCCTCCGTTTGATTGaacatgacaaaacaaaggaattcTATCAAGTAAATGATTTGTTATTGATCCCCGTCTTCAGCCACATAATGACCACAATCCCTTTCTGGGCCTATATCACAAAGAGCCTCTGGGATCAGTTTGGCTTTTAAATCATAATGCACAAGGTTTatatggacagggaggacctgatcctagatctccTACTCGGATGCACTTGTTGAATATGCGCCTCGGggccgtatccacaaagcatctcagagtaaaaCATTTGGTCGTAGGTGCTAGGAGACATTTTACTCCTACTcttatgggtaaaaataaaagctATGCAGGAAGCTTCTTTAGTCATAACAGTCCCCCACCTAGTCAAGAGATATTTAGGAGACCTCATGAGCTGTCCTAACCAGCTTAGAGTTACCAACAGGTGTCTTGGTAATAGAAAAAGGCAGTGCTTCCTGTGCCATAGACAGGCTGCTGCTTTGGAGGTGAAATAACATATAGAAATATCAAACAATCAACCCATAATAATGTACACCTTGTACTTTTGACAATGATTTCACAAGGCTTCATTCACACGACAGCCTAAATACTCACAACCACTAGGCTAATAAACAATCACACAGTTCTCTTTCAATTATTTCATGAACCTACATGTCATTTAAAGTTATCCCTTTGGAGCGCAATATCACGTTAAAACTAGCCGTGTCTATGGGTTGGGCATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGGTATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGGCATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGGTATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGACATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGACATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGACATCTACAGTCTATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGGTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGACATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGGTATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGGCATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGACATCTACAGTCTATTAACTCTGTGTTGGGTAAAACTAGCCGTGTCTATGGGTTGGACATCTACAGTCTATTAACTCTGTGTTGGGTAAAACTAGCAGTGTCTATGGGTTGGACATCTACAGTCTATATTAACTCTGTGTTGGGTAAAACtagacctttttgaaatggttaTGCAACATTATCGGCAAGTGACTTGATGCCTTAGATTTGTTGAACAGAAGAGTGCTGACATAACGTTCATATTTTAACTGTCAAACTGATTCAGTGCAATATTCCCATCACATTATTCTAAACATATGCAAACCAACATATTAGGGTAAATTAAAAGTAGACAAAGTGATGGTGTCAGGCAGATGATATCACACGTTTTACCCCTGCAACATTCCCCGTAGTTGTCTGAAGCTGTACAGCTGTCAGTGCCTCGTCCTGATTGGTTATTCCTCATCATTTGCAACAATGTCAATGAGCATCATCACTATCCTTCTTTTGCGGTACCTCAGACTGTGGTGATTACCAACAGAGAAACTTTTGAGTTGATTTTTCTCCTGGCTCAGAGTGTCTGAGCAGTAACTTATCCTcataaaacctactctgagctgggagcttttttttgtcttaaaacaGGATCCAGGATATTTTCTGATACGCTTTGTGGAATATGGCCCCTGTCTGTTTTCTGCTCTATAGTGTAATAAAGGCACCAGCTGTAGATGGACAAAGATCAGGCTTCTTCACTAGATAATACTACCAAAGTATATTCTACCATGTACAAATGTAGGTTTTCACATGCACCTCTATCATATGAGAATTAATGGCTGGCTAGAAGTTCATTGTGGCGACTAAATCGTTGTATAGAAAAGACCTGGCATTCTCAGtgtgtaataat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355783 lncRNA downstream 57205 55372199 ~ 55372529 (-) True G1188717
TU1355762 lncRNA downstream 89368 55339773 ~ 55340366 (-) True G1188696
TU1355759 lncRNA downstream 102380 55327073 ~ 55327354 (-) True G1188693
TU1355730 lncRNA downstream 124848 55304637 ~ 55304886 (-) True G1188675
TU1355724 lncRNA downstream 141520 55284446 ~ 55288214 (-) True G1188669
TU1355814 lncRNA upstream 85012 55517190 ~ 55517458 (-) True G1188744
TU1355822 lncRNA upstream 90761 55522939 ~ 55523269 (-) True G1188752
TU1355859 lncRNA upstream 101069 55533247 ~ 55536744 (-) False LOC110538789
TU1355860 lncRNA upstream 101069 55533247 ~ 55574537 (-) True LOC110538789
TU1355915 lncRNA upstream 187479 55619657 ~ 55620056 (-) True G1188831
XM_036941575.1 mRNA downstream 10673 55394864 ~ 55419061 (-) False LOC110519575
XR_005035605.1 mRNA downstream 10673 55395866 ~ 55419061 (-) True LOC110519575
XM_036941577.1 mRNA downstream 10674 55394864 ~ 55419060 (-) False LOC110519575
XM_036941576.1 mRNA downstream 10862 55394864 ~ 55418872 (-) False LOC110519575
XM_036941582.1 mRNA downstream 87883 55334459 ~ 55341851 (-) True LOC118936431
XM_036941579.1 mRNA upstream 2958 55435136 ~ 55509918 (-) False LOC110485238
XM_036941580.1 mRNA upstream 2958 55435136 ~ 55509918 (-) False LOC110485238
XM_036941581.1 mRNA upstream 101069 55533247 ~ 55552500 (-) False LOC110538789
XM_036941583.1 mRNA upstream 597243 56029421 ~ 56036818 (-) False LOC110486851
XM_036941584.1 mRNA upstream 597243 56029421 ~ 56036822 (-) False LOC110486851
TU1355681 other downstream 217019 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 403286 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 403286 55023010 ~ 55026448 (-) True LOC110486836
TU1355147 other downstream 598412 54823912 ~ 54831322 (-) False LOC110485228
TU1355745 other upstream 2638 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 2963 55435141 ~ 55455234 (-) True LOC110485238
TU1356467 other upstream 480046 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 480069 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 480069 55912247 ~ 55915885 (-) False G1189279

Expression Profile