RNA id: TU1355814


Basic Information

Item Value
RNA id TU1355814
length 269
lncRNA type intronic
GC content 0.47
exon number 1
gene id G1188744
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55517190 ~ 55517458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtaagaccattctactgccaatgtttgtctatggagattgcatggctgtgtgctagattGTATAAACCTGTAAGCAATAGGCGTGGCTAGAaacttgaagcacctttggcagcgactacagcatTGAGTCATATtatgtatgacgctacaagcctggcacacctgtatttggggagtttctctcatttttctctgcagatcctcccaagctctgtcaggctggatggggagcattgctgcacagcttttttcaggtctctccggaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355739 lncRNA downstream 85012 55429734 ~ 55432178 (-) False G1188682
TU1355741 lncRNA downstream 85012 55429734 ~ 55432178 (-) False G1188682
TU1355742 lncRNA downstream 85012 55429734 ~ 55432178 (-) False G1188682
TU1355743 lncRNA downstream 85012 55429734 ~ 55432178 (-) True G1188682
TU1355783 lncRNA downstream 144661 55372199 ~ 55372529 (-) True G1188717
TU1355822 lncRNA upstream 5481 55522939 ~ 55523269 (-) True G1188752
TU1355859 lncRNA upstream 15789 55533247 ~ 55536744 (-) False LOC110538789
TU1355860 lncRNA upstream 15789 55533247 ~ 55574537 (-) True LOC110538789
TU1355915 lncRNA upstream 102199 55619657 ~ 55620056 (-) True G1188831
TU1355918 lncRNA upstream 107401 55624859 ~ 55625061 (-) True G1188834
XM_036941579.1 mRNA downstream 7272 55435136 ~ 55509918 (-) False LOC110485238
XM_036941580.1 mRNA downstream 7272 55435136 ~ 55509918 (-) False LOC110485238
XM_036941575.1 mRNA downstream 98129 55394864 ~ 55419061 (-) False LOC110519575
XR_005035605.1 mRNA downstream 98129 55395866 ~ 55419061 (-) True LOC110519575
XM_036941577.1 mRNA downstream 98130 55394864 ~ 55419060 (-) False LOC110519575
XM_036941581.1 mRNA upstream 15789 55533247 ~ 55552500 (-) False LOC110538789
XM_036941583.1 mRNA upstream 511963 56029421 ~ 56036818 (-) False LOC110486851
XM_036941584.1 mRNA upstream 511963 56029421 ~ 56036822 (-) False LOC110486851
XM_036941574.1 mRNA upstream 570834 56088292 ~ 56110969 (-) False LOC110485237
XM_036941573.1 mRNA upstream 570834 56088292 ~ 56110971 (-) False LOC110485237
TU1355745 other downstream 61956 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other downstream 61956 55435141 ~ 55455234 (-) True LOC110485238
TU1355681 other downstream 304475 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 490742 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 490742 55023010 ~ 55026448 (-) True LOC110486836
TU1356467 other upstream 394766 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 394789 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 394789 55912247 ~ 55915885 (-) False G1189279
TU1356468 other upstream 394789 55912247 ~ 55915885 (-) False G1189279
TU1356469 other upstream 394789 55912247 ~ 55915885 (-) True G1189279

Expression Profile