RNA id: TU1355813


Basic Information

Item Value
RNA id TU1355813
length 229
lncRNA type intronic
GC content 0.45
exon number 1
gene id G1188743
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55517305 ~ 55517533 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttgtagcgtcatacataATATGACTCAatgctgtagtcgctgccaaaggtgcttcaagttTCTAGCCACGCCTATTGCTTACAGGTTTATACaatctagcacacagccatgcaatctccatagacaaacattggcagtagaatggtcttactgaagagctcagtgcctaccaacaagtcagttcataaaatgtctgccctgctagagctgccccggtcactgttattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355666 lncRNA upstream 22147 55494787 ~ 55495158 (+) True G1188620
TU1355592 lncRNA upstream 83894 55432271 ~ 55433411 (+) False LOC110538788
TU1355593 lncRNA upstream 83894 55432271 ~ 55433411 (+) True LOC110538788
TU1355626 lncRNA upstream 103127 55409265 ~ 55414178 (+) True G1188584
TU1355629 lncRNA upstream 103935 55412970 ~ 55413370 (+) True G1188586
TU1355826 lncRNA downstream 8125 55525658 ~ 55525980 (+) True G1188756
TU1355880 lncRNA downstream 64503 55582036 ~ 55582725 (+) True G1188801
TU1355896 lncRNA downstream 89770 55607303 ~ 55607553 (+) True G1188817
TU1355914 lncRNA downstream 101818 55619351 ~ 55619562 (+) True G1188830
TU1356052 lncRNA downstream 230408 55747941 ~ 56126644 (+) True G1188943
XM_036941586.1 mRNA upstream 84096 55424865 ~ 55433209 (+) False LOC110538788
XM_036941571.1 mRNA upstream 122540 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA upstream 122540 55340702 ~ 55394765 (+) False LOC110539040
XM_021558671.2 mRNA upstream 576814 54939020 ~ 54940491 (+) True LOC110486846
XM_036941558.1 mRNA upstream 583883 54925567 ~ 54933422 (+) True narfl
XM_036941578.1 mRNA downstream 316578 55834111 ~ 55915904 (+) True LOC110538766
XM_036941568.1 mRNA downstream 518107 56035640 ~ 56088193 (+) False LOC110485236
XM_036941569.1 mRNA downstream 518107 56035640 ~ 56088193 (+) False LOC110485236
XM_036941585.1 mRNA downstream 596630 56114163 ~ 56119485 (+) False LOC110486855
XM_021558682.2 mRNA downstream 596634 56114167 ~ 56121445 (+) True LOC110486855
TU1355596 other upstream 150989 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 394686 55121261 ~ 55122619 (+) True G1188386
TU1355296 other upstream 520010 54993674 ~ 54997295 (+) False G1188344
TU1356156 other downstream 420939 55938472 ~ 55939357 (+) True G1189040
TU1356992 other downstream 1318883 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 1360395 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 1536920 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 1536934 57054467 ~ 57055403 (+) False G1189819

Expression Profile