RNA id: TU1355896


Basic Information

Item Value
RNA id TU1355896
length 251
lncRNA type intronic
GC content 0.39
exon number 1
gene id G1188817
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55607303 ~ 55607553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatgtTTTGtccagatgaatgtggtaccttcaggcttttggaaattgctcccaaggatgaaccagacttgtggaggtctacaattttttttctgaggtattggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacatccaattgactcaaatgatgtcaattagcctatcagaagattctaaagccattacataattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355880 lncRNA upstream 24578 55582036 ~ 55582725 (+) True G1188801
TU1355826 lncRNA upstream 81323 55525658 ~ 55525980 (+) True G1188756
TU1355813 lncRNA upstream 89770 55517305 ~ 55517533 (+) True G1188743
TU1355666 lncRNA upstream 112145 55494787 ~ 55495158 (+) True G1188620
TU1355592 lncRNA upstream 173892 55432271 ~ 55433411 (+) False LOC110538788
TU1355914 lncRNA downstream 11798 55619351 ~ 55619562 (+) True G1188830
TU1356052 lncRNA downstream 140388 55747941 ~ 56126644 (+) True G1188943
TU1356055 lncRNA downstream 145734 55753287 ~ 55753576 (+) True G1188946
TU1356108 lncRNA downstream 235239 55842792 ~ 55843178 (+) True G1188996
TU1356142 lncRNA downstream 296242 55903795 ~ 55904343 (+) False G1189027
XM_036941586.1 mRNA upstream 174094 55424865 ~ 55433209 (+) False LOC110538788
XM_036941571.1 mRNA upstream 212538 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA upstream 212538 55340702 ~ 55394765 (+) False LOC110539040
XM_021558671.2 mRNA upstream 666812 54939020 ~ 54940491 (+) True LOC110486846
XM_036941558.1 mRNA upstream 673881 54925567 ~ 54933422 (+) True narfl
XM_036941578.1 mRNA downstream 226558 55834111 ~ 55915904 (+) True LOC110538766
XM_036941568.1 mRNA downstream 428087 56035640 ~ 56088193 (+) False LOC110485236
XM_036941569.1 mRNA downstream 428087 56035640 ~ 56088193 (+) False LOC110485236
XM_036941585.1 mRNA downstream 506610 56114163 ~ 56119485 (+) False LOC110486855
XM_021558682.2 mRNA downstream 506614 56114167 ~ 56121445 (+) True LOC110486855
TU1355596 other upstream 240987 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 484684 55121261 ~ 55122619 (+) True G1188386
TU1355296 other upstream 610008 54993674 ~ 54997295 (+) False G1188344
TU1356156 other downstream 330919 55938472 ~ 55939357 (+) True G1189040
TU1356992 other downstream 1228863 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 1270375 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 1446900 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 1446914 57054467 ~ 57055403 (+) False G1189819

Expression Profile