RNA id: TU1356052


Basic Information

Item Value
RNA id TU1356052
length 2377
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1188943
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55747941 ~ 56126644 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaggaaataaATCGATTTAAATGAATTCAATAGGCACTAaactatgtatttcacatgactgggaatacaaatatgcataTGTTAGTTAAAGATATCTTTAAAACtgaagGTagggggtgtggatcagaaaaccagtcagtatctgctgggaccaccatttgtctcatgcagcgcgacacatctccatacatagagttgatcaggctgttgattgtagctTGTGAAATATTGTCCCACTtcttttcaatggctgtgcgaagtcgctgaatattggtgggaactggaacattcTGTTGCACATGTCGATCCAGCgcgtcccaaacatgctcaatcggtgacatgtctggtgagtatgcagaccatggaagaactgggacattttcagcttctagaTATTGTATACAGaaccttgcaacatggggctgtgcattataatgctgaaacatgaggtgatggcggcggatgaatggcacgacaatgggcttcGGGAtttcatcacggtatctctgtgcattaaaattgccatcgataaaatgtaattgtgttcattgtccgtagcttatgcctgcccataccataaccccaccgccaccatgggacacactgttcacaacattgacatcaacaAACCACTCGCCTACACGATGcctctgcagttgtgaggccggttgggcatactgccaaattcccAAAAATGATGTTTgaggctgcttatggtagagaaattgacATTTGATCTGgaaacagttctggtggacattcctgcagtcagcatgccaattgcacgctccctctaaacttgagacatctgtggcattgtgttgtgacaaaactccacattttaaagtggtcttttattgtacccagcacaaggtccacctgtgtagtgatcatgctgttaaatcaacttcttgatatgccatacctgtcaggtgaatggattattttggcaaaagagaaatgctcactaacagggatgtaaatacatttgtgcacaacatttgagagaagtaCGTTTTttatgcatatggaacatttctggaatattttatttcagctcatgaaacatgggaccaacactttacatgctgcgtttacatttttgttcagtgtatatttgtttattttcataCAGCAACGTTCCAAACTCAGGGAGTAGGCAAGGCAGACCAAAGAAAAATGATCAAATTAGCCACTAGGTTGAAAATGCCTTCCATGAAGCATGAAGATAAAAGCAAAATGGCTGCACGGTCTATGGGAAGTTATGAGTTCCATTTAACCATGTCCTTTTAAAAATGGATGTCCACAGCACTACTGGCTCATATTCATTAGGAAACGTAAGGGAAAACGTTTTAAAACAGTTGATTTTTCCCTCAAaggtttcagtctgctttcttccgtttggtgcctaatgaacatgacccggGCTACTTGAATAACAGACAGATGAGAGACGTTTCACAGAATGATTACTGTTGGTATATAGAGTTAAGGTAAACAGGTCTCACATCTTCCACTAGTAACAGCAGCACTGTATGAACACTTAACTGAAAAACCAATCAGCAAAATGACAATGACACACTCAACCAATCAAATTTGTTGTACACTTCTTGGAAGGAGTTGAGGGGGAAAAATGATGTGCGCTTCCCTTGAATGAGTATACTTCTATTCGACAGTCACTAAGCAGTTGGTCTTTAGTAATGATAGCAACAATGCAATTTTACATATCATATTCGAGATACATCAACAATAACGAGCAACGCTACCATAAGGACCTCTGTAAATTGTGATGCATAGGTCCCGTATTGCATACATTCATTTATCTACTGCCCTATGGCAACTAACATTTTTTGACGAGTGAttgaagcaacaaaaaaaagagtCAGAAATACATTCTGATATTTCAACGGCCCAATCTCAGGCTTTCCTCGACTCCTTTTCACACACGCCCAGCGAGAACGCATGTAGTATGTCGCCACTCATCATCACCGACAAAAATAGGTCTAGAAAATCTATATATGTGCATCTGTTTACATAAATAAATCCTCCCACCTTCTCAGGGAGAGCGTTTGCAGCAGTAGGGCAACTGTGTATTAGACAATGTCATTTCTAATGGCATCTGTAGTAGTGAAATTACTGGATCTTCAGCACAGCAGCCCACAGTGTCAAGTTGTCCCGTACACTAGTGTCCGGCCCTGGGTCCATCCGCCTGGAGGAGGGGGGACAGCATGGGGTGATGCCCAGCTGGAGGTGCCGCTCCTGTGTAGAGGTGGACAGGAGGGTGGGTCTGGAGGTTTAGATGACTGGGCCTGAGCGGTCATTGGTGACTGTGGGACGTAGCTTGACTGCGGTGAACGGGTTCCCTCCCCTAAGGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355914 lncRNA upstream 128379 55619351 ~ 55619562 (+) True G1188830
TU1355896 lncRNA upstream 140388 55607303 ~ 55607553 (+) True G1188817
TU1355880 lncRNA upstream 165216 55582036 ~ 55582725 (+) True G1188801
TU1355826 lncRNA upstream 221961 55525658 ~ 55525980 (+) True G1188756
TU1355813 lncRNA upstream 230408 55517305 ~ 55517533 (+) True G1188743
TU1356265 lncRNA downstream 20998 56147642 ~ 56148404 (+) True G1189112
TU1356240 lncRNA downstream 34187 56160831 ~ 56161860 (+) True G1189093
TU1356283 lncRNA downstream 51553 56178197 ~ 56179439 (+) True G1189128
TU1356291 lncRNA downstream 68029 56194673 ~ 56195341 (+) True G1189134
TU1356352 lncRNA downstream 175511 56302155 ~ 56303161 (+) True G1189182
XM_036941586.1 mRNA upstream 314732 55424865 ~ 55433209 (+) False LOC110538788
XM_036941571.1 mRNA upstream 353176 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA upstream 353176 55340702 ~ 55394765 (+) False LOC110539040
XM_021558671.2 mRNA upstream 807450 54939020 ~ 54940491 (+) True LOC110486846
XM_036941558.1 mRNA upstream 814519 54925567 ~ 54933422 (+) True narfl
XM_036941590.1 mRNA downstream 469977 56596621 ~ 56674315 (+) True LOC110538765
XM_036939771.1 mRNA downstream 551958 56678602 ~ 56679864 (+) True LOC118938096
XM_036941591.1 mRNA downstream 561939 56688583 ~ 56919047 (+) False LOC118938331
XR_005035611.1 mRNA downstream 833954 56960598 ~ 56963017 (+) True LOC110486865
XM_036941601.1 mRNA downstream 881356 57008000 ~ 57019247 (+) True LOC110517037
TU1355596 other upstream 381625 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 625322 55121261 ~ 55122619 (+) True G1188386
TU1355296 other upstream 750646 54993674 ~ 54997295 (+) False G1188344
TU1356992 other downstream 709772 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 751284 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 927809 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 927823 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 927823 57054467 ~ 57055617 (+) False G1189819

Expression Profile