RNA id: TU1356143


Basic Information

Item Value
RNA id TU1356143
length 595
lncRNA type read_through
GC content 0.36
exon number 3
gene id G1189027
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55903795 ~ 55904957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgactctctatctgactctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgactatgtctgtctgtctatatgtctatctgtctgtctgtctgtctgactgactgtctgactctctgtctgtctatctgtctctctgtctgtctatctgtctttctatatctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgactctctgtctttctatctgactatgtctgtctatctgtctctttaTACCTctttgtctgtctatctgtctctatgtctgactcaattaaattcaattcaagggctttattggcatgggaaacatgagttaacattgccaaagcaagtgaggtagataatatataaagtgaaataaacaataaaaattaacagtaaacattacacatacagaagtttcaaaacaataaagacattacaaatgtcatattatatatatatatatacagtgttttaacaatgtacaaatggttaaaggacacaagataaaataaataagcataaatatgggttgtatttacaatggtgtgtgttcttcactggtt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356108 lncRNA upstream 60617 55842792 ~ 55843178 (+) True G1188996
TU1356055 lncRNA upstream 150219 55753287 ~ 55753576 (+) True G1188946
TU1355914 lncRNA upstream 284233 55619351 ~ 55619562 (+) True G1188830
TU1355896 lncRNA upstream 296242 55607303 ~ 55607553 (+) True G1188817
TU1355880 lncRNA upstream 321070 55582036 ~ 55582725 (+) True G1188801
TU1356158 lncRNA downstream 42741 55947698 ~ 55952898 (+) False G1189042
TU1356159 lncRNA downstream 42741 55947698 ~ 55958296 (+) True G1189042
TU1356163 lncRNA downstream 50228 55955185 ~ 56024767 (+) False G1189044
TU1356180 lncRNA downstream 80672 55985629 ~ 56026601 (+) True G1189054
TU1356184 lncRNA downstream 94479 55999436 ~ 56000215 (+) False G1189057
XM_036941586.1 mRNA upstream 470586 55424865 ~ 55433209 (+) False LOC110538788
XM_036941571.1 mRNA upstream 509030 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA upstream 509030 55340702 ~ 55394765 (+) False LOC110539040
XM_021558671.2 mRNA upstream 963304 54939020 ~ 54940491 (+) True LOC110486846
XM_036941558.1 mRNA upstream 970373 54925567 ~ 54933422 (+) True narfl
XM_036941568.1 mRNA downstream 130683 56035640 ~ 56088193 (+) False LOC110485236
XM_036941569.1 mRNA downstream 130683 56035640 ~ 56088193 (+) False LOC110485236
XM_036941585.1 mRNA downstream 209206 56114163 ~ 56119485 (+) False LOC110486855
XM_021558682.2 mRNA downstream 209210 56114167 ~ 56121445 (+) True LOC110486855
XM_036941590.1 mRNA downstream 691664 56596621 ~ 56674315 (+) True LOC110538765
TU1355596 other upstream 537479 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 781176 55121261 ~ 55122619 (+) True G1188386
TU1355296 other upstream 906500 54993674 ~ 54997295 (+) False G1188344
TU1356156 other downstream 33515 55938472 ~ 55939357 (+) True G1189040
TU1356992 other downstream 931459 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 972971 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 1149496 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 1149510 57054467 ~ 57055403 (+) False G1189819

Expression Profile