RNA id: TU1356467


Basic Information

Item Value
RNA id TU1356467
length 3389
RNA type TUCP
GC content 0.43
exon number 2
gene id G1189279
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55912224 ~ 55915885 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCACACCTTTATCATTTAGCTAACAGATGTTCACAGCAACAATGCAATAGGAGAAAACAGAACAGAAGCGTATCGCTGCGGCACTGCAGCCTCTTAGGTCTTCCAATATATTTATAGATATTTACACTGACAATATGAAAATTGCAAGTACAACGCCCAGGGCTGAGTTAACCCTTTAACTGCTGCTGTATGAAGGGAGGAGAAGGCTGAGTTGGTAGAGCAactccagggttgtgggttcgattcccacggaggaccagtacaaaaatgtatgcactcactactgtaagtcactctggataagagcgtctgctaaatgactcaaacgtAAATGTATAATGTTAACTCTTTCAACTTAGTCTGAGGATCCAGGTCACACAGGCTGTAGTGTGACCTCTATGTAGTTGTAGTCCTGTTCGTATGGCCACCTGAAACATTCAGTATACCCAACATTCCACAGGCACCAGGTTAGCCATACGTAGCCAGATTCTAGGGGCTATTGGTGGAATATAGAACGCCTGTATAGAGCTCAACGCTTCCAGCAATCAAAGACAGCTTTTTCAGATCATAAAATGGACATAACAGTAAATAGTACCAAAATATAATTAGTACCAAAACATAATTAGTACCAAAACATAATTAGTACCAAAACATAATTAGTACCAAAACATAATTAGTACCAAAACATAATTAGTACCAAAACATAAAGAGAAATGTTTCAAAAAGAGAAAAACCTTATTTCCACATCCATGTTTAAATGTCATGACACGTCAATAAATCCTTTTCATTTGGAAAAGCGTTGAACAATACAACAGGAACATTGTGCGTGACTGTGTAGCCTGGATTGTAACAGAAAACTGCATTTGACATTTGTTTGGTGTTGTAATGGTAACTTTAGTTGGTATAaaagatgaatggcatgacaacggGGTAGTGCATCTGACTTGTATACTGGTATACACTGTAGTCACAGTTCCAACCTATCTTTACATCCACATGGATAGAGACTAGACTATTTCTCCCAAATAATCATTTCGCTGATACTGACGTCAACTTGAGGCTGCGTGAAGTGTGAACAAAACTGGTGAGATATTGTTGGTAATAAAATCATCTCACGTGGGGATAAAGCAAAGAGATCATGTATTTTGGGGGAAAAACAGCAAAAATCTCTCATTTGTTGATATGCAGATACATGGGGATTTTTACCAAGACCTCGAAGGCCTATTAAATGAATAGTGTCAGATTGATATTCTCTCATGGCAGTATTTACATAGtcctgtattattattatatgtatgaatcccaaatcgcaccctattccatatatagtgcactacttttgaccagagccctatggagttaggatgtcatttgggagGTACCCTTTGTATCCACATCCTGTAAGCCAGGACTGCCATGCCAGCTGAGACCAGAACAGATAGGCTCAGCTAACGTGAGATCTCTGAGACCAGAACAGGTAGGCTCAGCTAACGTGAGATCTCTGAGACCAGAACAGGTAGGCTCAGCTAACGTGAGATCTCTGAGACCAGAACAGGTAGGCTCAGCTAACATGAGATCTCTGAGACCAGAACAGATAGGCTCAGCTAACGTGAGATCTCTGAGACCAGAACAGGTAGGCTCAGCTAACGTGAGATCTAAGCAAAAACAAACGTTTCAGCCATGTCGGTCACACTGTCATCATCTATCACAACTTCCTGTAAAGGCTATTCTCATGTCCTTGAAAAACATGTCCTAGTAAACCACGCAGCATGTTTTCATTCCAGCCATTCCAGCAAAGCATTGATTTAGAAGTTCCTCAGTCAAAAATGCAGAATTTCTGAATAAATGGGGCAGCAATTATCTTAAGTGCCAACCATGAACGAGTGACACATTTTGATGGAAGGCTTTGATGAAAAGAAATGGAAAGATTGAATGATATCTAATATTAATGGACGAGGGCAAGGGCACTCAACACTAGTCAACTTCTGGGCTGCTGAGAGGTGCTTCAATAAGAGCCCTTGTTTAAGAGAGCTGCTTCCATCCAGGCTTTGAACACTGAATTTAAGTTGAACTGAAAGCTTTATTGAAAAGGAAACCGGTAGCACTTTCTTTAATGGTGTACTGCTTCGACGGGTATTTAGGTGGTACTTATTAGGAAACGATGTGGCATCACTGAGTTCTAGCTGGGGCTTTCACTATACTTTATGCTTAAAATTCACCACAATTGGGAACTACCTGGATCAAAATGGTGTATATTTAAATGCTTGTTTGAATCCCAAAGTACCAAATGAGTACTTTATGTAGTAATTAATGGGGTATTACTGTACAATTACCATTTTACCATGTAATTTCTTAGTAAATACCAGGTACTTTCTGTACTGTAAACAGCCTCTTGTATAATGTCTCATAGTAATGGAGGCCTATAGGCAAAGTCATAGATAGTGATGGGTTGAAAATGGAGGCAACTGAAATAACGGTCACACTGACATTCATCATAAATAATATACTATATTCTTTTCATACTCTCCCTTTAAAATGAAAGCTTTACAAACCTTCTATTCCGTTCCTCCAGTTACTGTGCATAAATTAATCTCAAACCACATTTTAACTTGTTAAAGTAAAATCTCATTTGGTTGTGTaaatatactgtagctagcttaGCGCTAACCCGAGCAAACAATGATAGCCTTCGCATTCAAACAACCCCCCAAAAGTAAAATAAGAAAACCAACAAAGTAAAATCAAAATGGTCCCTATTTATCATGTCCAGGAGAAGTAATAAAACATTGGTACTTAGCAAAGACcaggcctcttctctcctcagctCACTGCTATATCTGTGGACCAACAGTACCTATATATAAACACACGTACATGGGAGGTTCCATAGAGGCATTGACGGCAAGTCTCGGAATTCACTGAATTCAAAATGGCGGCTCCCGCACAGTCACAGGATCCAGTCAGTCTCTCCGTGAGACCAGACACCCATGGTTGGTTCACCATCAACGGTAGTCTCTTTGGAGGTCCAGGATGGGGAGAAGCGGGAGAACCAGGGGtaccacccctccaccccccatctccctctcttcctagcCAGGCCTCACTACCTGTGCCCTGGGTTCCTGTGGGTGGCTGTGTCCCTGCCCCCTCTGGCTTCTCTGGCCCAGTGGTGGTCGTCCACCTCCACCACGTTACTGTAGCCCTCCTTCTCCACGCAGACAGCCAGGACCTGGAGCACCAGGCGCAGCCTCCGGTCCATGGCCTCCAGGTGGGGCTGGATGAGGACGGGGTGGAGGCGGTCACGCAGCAGGGACTCCTCCATCAGACGGCTCAGCTGGTACTCCTCCTTGGCGAGCAGCTGCAGACGCAAGTGGGTCGACTTCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356422 lncRNA downstream 85070 55826382 ~ 55827154 (-) True G1189238
TU1356378 lncRNA downstream 153195 55758169 ~ 55759029 (-) True G1189200
TU1355924 lncRNA downstream 277628 55634306 ~ 55634596 (-) True G1188840
TU1355918 lncRNA downstream 287163 55624859 ~ 55625061 (-) True G1188834
TU1355915 lncRNA downstream 292168 55619657 ~ 55620056 (-) True G1188831
TU1356481 lncRNA upstream 28770 55944655 ~ 55954153 (-) True G1189291
TU1356483 lncRNA upstream 67086 55982971 ~ 56063191 (-) False G1189292
TU1356485 lncRNA upstream 84119 56000004 ~ 56004128 (-) True G1189293
TU1356482 lncRNA upstream 88590 56004475 ~ 56063191 (-) True G1189292
TU1356480 lncRNA upstream 103183 56019068 ~ 56021552 (-) True G1189290
XM_036941581.1 mRNA downstream 359724 55533247 ~ 55552500 (-) False LOC110538789
XM_036941579.1 mRNA downstream 402306 55435136 ~ 55509918 (-) False LOC110485238
XM_036941580.1 mRNA downstream 402306 55435136 ~ 55509918 (-) False LOC110485238
XM_036941575.1 mRNA downstream 493163 55394864 ~ 55419061 (-) False LOC110519575
XR_005035605.1 mRNA downstream 493163 55395866 ~ 55419061 (-) True LOC110519575
XM_036941583.1 mRNA upstream 113536 56029421 ~ 56036818 (-) False LOC110486851
XM_036941584.1 mRNA upstream 113536 56029421 ~ 56036822 (-) False LOC110486851
XM_036941574.1 mRNA upstream 172407 56088292 ~ 56110969 (-) False LOC110485237
XM_036941573.1 mRNA upstream 172407 56088292 ~ 56110971 (-) False LOC110485237
XR_005035604.1 mRNA upstream 173497 56089382 ~ 56110971 (-) False LOC110485237
TU1355745 other downstream 456990 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other downstream 456990 55435141 ~ 55455234 (-) True LOC110485238
TU1355681 other downstream 699509 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 885776 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 885776 55023010 ~ 55026448 (-) True LOC110486836
TU1356525 other upstream 192059 56107944 ~ 56110984 (-) True LOC110485237
TU1356891 other upstream 754408 56670293 ~ 56674238 (-) False G1189660
TU1356892 other upstream 754408 56670293 ~ 56674238 (-) True G1189660
TU1357552 other upstream 1164932 57080817 ~ 57085471 (-) True LOC110486894
TU1357558 other upstream 1173286 57089171 ~ 57089915 (-) True G1190199

Expression Profile