RNA id: TCONS_00042888


Basic Information

Item Value
RNA id TCONS_00042888
length 2869
lncRNA type inter_gene
GC content 0.35
exon number 4
gene id XLOC_021608
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19177891 ~ 19182388 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCAGCCGccacacgaccgaccttcaacgttgaaatatggttgaaataaggtcagatgtgttttgaacgttgaaataatgttgatagaacgtttaatgttgaacggttgaaaaacagcctgcatatgacaaggcttcaacgttgaaatgtggttgaaaatacgtcagttgtttaatgttgaaacaatgttgaatgataaatggttaaaaaaagttacagaaatccttgtacaaatcaacgttgacatttttttatcatggtctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcggaggactcggcgcacgcggccacgcgcagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagagagacgcactaacttgcacagcattaaatggaaaaggctttgtccatgtccagttgaggggCATCAAGAACACGCAGATAGCCTacctgtgtcagcctggacagactgcagttctgctactccatgccaaggcttttgtatggatgtcttgactactactgtgttctctaaaggttttctggaggctccatttgagggcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacaggcatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgactagtacggtgttctctaaaggtataactggagcaaaacaatagcatccgttacagtgaaatttgtgttcataaaagatagtgatatgtgtaacaggtccagtacatttgtcataaaggtaaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtGTGTGCTTACTGCTCGTAGTAAACACACGCTGATCTGATGAGGGAGAGATATACGCAAACacaattgtatttaatgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggaccattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctaaAGATTAACAGGACTTGTGGGATGAcacaagtaattaattacagaacctatatgaacacttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccatgtgaacatgcaatttttatgatactaataataataatggaataacaaattgcttttactgttgtgtttgtgagagagaatcaaaccatatattctacacattttcttgatgatttactgaaatatttgtctatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatgtactttatacaaaaaaaaaaaaaaaaaaaaaaaaaaactaaatatttagcatgcagacctgcaaagtgaaggagtaatgtcaggttaagattatagcatgagttttcactattgtgaatgtgaagccattcattcacaatgaattggaatagcaaacctcattattaattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaactgctagactgatatagatgttttagtgttttacacttgattctttgtccccagtgccatcttttacctcTATCTGTTTCTATCAATctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatgttttttattttatttttttactgcagccactttaaaaatgggtattttgtaaactttgtaaacagaATTGAAGCAtagtttagttacttagtttaatttagttagtatctgtctttctgaagacggtaacactttacaataaggttgtattagtaagtgttaatgtatttactaacatgaacaaagagcaatgaagcatctttcatataaagaaagtacagtttatgtcagctcagtgcattaatgttaacaagcatacattttgattttaatagcatcaggacatatttcaattaattaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgccttttttctgtatttgagtgtacagcatgtatagtaacctgcatggttttaatgaactatgtatgctgtaaatgttgctgtatatttagaataattgaaataatgaggtgtgaattaaataaattgatacacagactaagttgtgtatttgtgtcgtgtatttttaattagtaaaaatttgtttgctatttttatggactttgcgttgtatgtaattcctatttaacttacgttgaaatgtatgacggtgaaacaacgtcacggtatcaacgttgatccaatttgcaaaatcgaaaggtaattcaaccttcattcaacgtctacaaaacgaccacaattcacccatgaagaaggtaagagtgaaacaacgttgtgatttcaacggtgaatcaccggtggtggtccgacggtgaaacaacgtcactatataaacgttgatccaatttgcaaaatcgaaaggtaattcaacgttgatccaaccatagacctgacgttgattcaacgttgaatcaccgttgaaatgccggctgggaTATATCAAAAtctctttttaataaatattttttgtttcatggTAACTTCTGTGATCTTTTTCATATCAGTCAAACATCGTACAGCATTATACAGTGACAAAC

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0009060 aerobic respiration biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042883 lncRNA upstream 58453 19105546 ~ 19119441 (+) False XLOC_021607
TCONS_00042882 lncRNA upstream 110907 19051485 ~ 19066987 (+) True XLOC_021606
TCONS_00044811 lncRNA upstream 248892 18924470 ~ 18929002 (+) True XLOC_021604
TCONS_00042874 lncRNA upstream 486412 18688354 ~ 18691482 (+) False XLOC_021600
TCONS_00042893 lncRNA downstream 15973 19198361 ~ 19200193 (+) True XLOC_021610
TCONS_00044812 lncRNA downstream 291008 19473396 ~ 19476151 (+) True XLOC_021614
TCONS_00042902 lncRNA downstream 411851 19594239 ~ 19600895 (+) False XLOC_021616
TCONS_00042904 lncRNA downstream 411851 19594239 ~ 19603908 (+) False XLOC_021616
TCONS_00042903 lncRNA downstream 412068 19594456 ~ 19598321 (+) False XLOC_021616
TCONS_00042884 mRNA upstream 58451 19106148 ~ 19119443 (+) False XLOC_021607
TCONS_00042885 mRNA upstream 59294 19106188 ~ 19118600 (+) True XLOC_021607
TCONS_00042881 mRNA upstream 226746 18944388 ~ 18951148 (+) True XLOC_021605
TCONS_00042880 mRNA upstream 383333 18779043 ~ 18794561 (+) True XLOC_021603
TCONS_00042877 mRNA upstream 420816 18722715 ~ 18757078 (+) False XLOC_021601
TCONS_00042891 mRNA downstream 431 19182819 ~ 19187816 (+) True XLOC_021609
TCONS_00042892 mRNA downstream 15856 19198244 ~ 19201328 (+) False XLOC_021610
TCONS_00042894 mRNA downstream 20248 19202636 ~ 19206419 (+) True XLOC_021611
TCONS_00042895 mRNA downstream 31084 19213472 ~ 19221027 (+) True XLOC_021612
TCONS_00042897 mRNA downstream 376186 19558574 ~ 19583814 (+) False XLOC_021615
TCONS_00042879 other upstream 446495 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042875 other upstream 486412 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042869 other upstream 888693 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042854 other upstream 1303747 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042853 other upstream 1304296 17873526 ~ 17873598 (+) True XLOC_021588
TCONS_00042896 other downstream 35140 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042898 other downstream 377686 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042916 other downstream 613050 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042917 other downstream 618748 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042920 other downstream 631317 19813705 ~ 19821737 (+) False XLOC_021624

Expression Profile

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