RNA id: TU1356180


Basic Information

Item Value
RNA id TU1356180
length 329
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1189054
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55985629 ~ 56026601 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcagtgtgttatagtgtctctaggaagtgaactactgtaacagttcagtgtttcatattgtctctctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgtaacagttcagtgtgttatagtgtctctctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacatttcagtgtgttatagtgtctctcactaagacatgaaatactgtaacagttctgtgtgttattgtgtctctcggaggtgaactactgtaacagttcagtgN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356159 lncRNA upstream 27333 55947698 ~ 55958296 (+) True G1189042
TU1356158 lncRNA upstream 32731 55947698 ~ 55952898 (+) False G1189042
TU1356143 lncRNA upstream 80672 55903795 ~ 55904957 (+) True G1189027
TU1356142 lncRNA upstream 81286 55903795 ~ 55904343 (+) False G1189027
TU1356108 lncRNA upstream 142451 55842792 ~ 55843178 (+) True G1188996
TU1356201 lncRNA downstream 58267 56084868 ~ 56088189 (+) True LOC110485236
TU1356227 lncRNA downstream 94626 56121227 ~ 56123750 (+) False G1189092
TU1356228 lncRNA downstream 94626 56121227 ~ 56123750 (+) False G1189092
TU1356229 lncRNA downstream 94626 56121227 ~ 56123750 (+) False G1189092
TU1356231 lncRNA downstream 94626 56121227 ~ 56123750 (+) False G1189092
XM_036941578.1 mRNA upstream 69725 55834111 ~ 55915904 (+) True LOC110538766
XM_036941586.1 mRNA upstream 552420 55424865 ~ 55433209 (+) False LOC110538788
XM_036941571.1 mRNA upstream 590864 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA upstream 590864 55340702 ~ 55394765 (+) False LOC110539040
XM_021558671.2 mRNA upstream 1045138 54939020 ~ 54940491 (+) True LOC110486846
XM_036941568.1 mRNA downstream 9039 56035640 ~ 56088193 (+) False LOC110485236
XM_036941569.1 mRNA downstream 9039 56035640 ~ 56088193 (+) False LOC110485236
XM_036941585.1 mRNA downstream 87562 56114163 ~ 56119485 (+) False LOC110486855
XM_021558682.2 mRNA downstream 87566 56114167 ~ 56121445 (+) True LOC110486855
XM_036941590.1 mRNA downstream 570020 56596621 ~ 56674315 (+) True LOC110538765
TU1356156 other upstream 46272 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 619313 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 863010 55121261 ~ 55122619 (+) True G1188386
TU1355297 other upstream 988334 54993674 ~ 54997295 (+) False G1188344
TU1356992 other downstream 809815 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 851327 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 1027852 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 1027866 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 1027866 57054467 ~ 57055617 (+) False G1189819

Expression Profile