RNA id: TU1356189


Basic Information

Item Value
RNA id TU1356189
length 1066
lncRNA type intronic
GC content 0.42
exon number 3
gene id G1189058
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56010936 ~ 56023484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggacctgagccctaggaccatgccccaggactacctgacatgatgactccttgctgtccccagtccacctggctgtgctgctgctccagtttcaactgttctgccttattattattcgaccatgctggtcatttatgaacatttgaacatcttggccatgtcctgttataatctccacccggcacagccagaagaggactggccaccccacatagcctggttcctctctaggtttcttcctaggttttggcctttctagggagtttttcctagccaccgtgcttctacacctgcattgcttgctgtttggggttttaggctgggtttctgtaccgcactttgagatatcagctgatgtacgaagggctatataaatacatttgatttgatttgaattgatatagtgtcaccaggatgtgaactactgtaattgttcagtgtgttatagtttctcttgaaggtgaactactgtaaaagttcagtgtgttatagtgtctctaggatgtgaactactgtaacagttcagtgtgttattgtgtctctatttaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgtaacagttcagtgtgttatgttGTCTCTCACTTAGACGAGAAATACTGTAtcatttcagtgtgttatagtgtttctaagaggtgaactactgtaacagttcagtgtgttatattgtctctaggagctgaactactgtaacagttcagtgtactgttgtgtctcaaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaggaggtgaactactgtaacagttcagtgtgttatagtgtctctaagaggtgaactactgtaacagttcagtgtgttatcgtATCACCAGTTGGTGAACAACTGTAAacgttcagtgtgttatagtggctctaagaggtgaactactgtaacagttcagtttgttatagtgtctctcactaatacgtgaaatactgtaacagttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356185 lncRNA upstream 7965 55999436 ~ 56002971 (+) True G1189057
TU1356184 lncRNA upstream 10721 55999436 ~ 56000215 (+) False G1189057
TU1356159 lncRNA upstream 52640 55947698 ~ 55958296 (+) True G1189042
TU1356158 lncRNA upstream 58038 55947698 ~ 55952898 (+) False G1189042
TU1356143 lncRNA upstream 105979 55903795 ~ 55904957 (+) True G1189027
TU1356201 lncRNA downstream 61384 56084868 ~ 56088189 (+) True LOC110485236
TU1356227 lncRNA downstream 97743 56121227 ~ 56123750 (+) False G1189092
TU1356228 lncRNA downstream 97743 56121227 ~ 56123750 (+) False G1189092
TU1356229 lncRNA downstream 97743 56121227 ~ 56123750 (+) False G1189092
TU1356231 lncRNA downstream 97743 56121227 ~ 56123750 (+) False G1189092
XM_036941578.1 mRNA upstream 95032 55834111 ~ 55915904 (+) True LOC110538766
XM_036941586.1 mRNA upstream 577727 55424865 ~ 55433209 (+) False LOC110538788
XM_036941571.1 mRNA upstream 616171 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA upstream 616171 55340702 ~ 55394765 (+) False LOC110539040
XM_021558671.2 mRNA upstream 1070445 54939020 ~ 54940491 (+) True LOC110486846
XM_036941568.1 mRNA downstream 12156 56035640 ~ 56088193 (+) False LOC110485236
XM_036941569.1 mRNA downstream 12156 56035640 ~ 56088193 (+) False LOC110485236
XM_036941585.1 mRNA downstream 90679 56114163 ~ 56119485 (+) False LOC110486855
XM_021558682.2 mRNA downstream 90683 56114167 ~ 56121445 (+) True LOC110486855
XM_036941590.1 mRNA downstream 573137 56596621 ~ 56674315 (+) True LOC110538765
TU1356156 other upstream 71579 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 644620 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 888317 55121261 ~ 55122619 (+) True G1188386
TU1355297 other upstream 1013641 54993674 ~ 54997295 (+) False G1188344
TU1356992 other downstream 812932 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 854444 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 1030969 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 1030983 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 1030983 57054467 ~ 57055617 (+) False G1189819

Expression Profile