RNA id: TU1356229


Basic Information

Item Value
RNA id TU1356229
length 2400
lncRNA type read_through
GC content 0.42
exon number 2
gene id G1189092
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56121227 ~ 56123750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGACTGTAGATGCCCAACCCATAGACACGGCTAGTTTTACCCAACACAGAGTTAATATAGACTGTAGATGTCCAACCCATAGACACGGCTAGTTTTACCCAACACAGAGTTAATATAGACTGTAGATGTCCAACCCATAGACACGGCTAGTTTTACCCAACACAAAGTTAATATAGACTGTAGATGTCCAACCCATAGACACGGCTAGTTTTACCCAACACAGAGTTAATATAGACTGTAGATGTCCAACCCATAGACACGGCTAGTTTTACCCAACACAGAGTTAATATAGACTGTAGATGCCCAACCCATAGACACGGCTAGTTTTACCCAACACAAAGTTAATATAGACTGTAGATGTCCAACCCATAGACACGGCTAGTTTTAACATGATATTGCGCTCCAAAGGGATAACTTTAAATGACATGTAGGTTCATGAAATAATTGAAAGAGAACTGTGTGATTGTTTATTAGCCTAGTGGTTGTGAGTATTTAGGCTGTCGTGTGAATGAAGCCTTGTGAAATCATTGTCAAAAGTACAAGGTGTACATTATTATGGGTTGATTGTTTGATATTTCTATATGTTCTTTCACCTCCAAAGCAGCAGCCTGTCTATGGCACAGGAAGCCCTGCCTTTTTCTATTACCAAGACACCTGTTGGTAACTCTGGCTGGTTAGGACAGCTCATGAGGTCTCCTAAATATCTCTTGACTAGGTGGGGGACTGTTATGACTAAAGAAGCTTCCTGCATagcttttatttttacccataagAGTAGGAGTAAAATGTCTCCTAGCACCTACGACCAAATGttttactctgagatgctttgtggatacggccCCGAGGCGCATATTCAACAAGTGCATCCGAGTAggagatctaggatcaggtcctccctgtccatatAAACCTTGTGCATTATGATTTAAaagccaaactgatcctagaggCTCTTTGTGATATAGGCCCAGAAAGGGATTGTGATCATTATGTGGCTGAAGACGTGGATCAATAACAAATCATTTACTTGATAgaattcctttgttttgtcatgttCAATCAAACGGAGGCACAAGTAGATTTTGTGCTCGATGTTAAATTCCAATTGCGCCACACCTGGGAATTGTTCAGTTCTGCCACTTCTGAAGCGCCTTCTGTTTCATGTAGTCACATTTTAGGATTaattatgtattttttaaagGAGACTCATTACTTTGGGAAATGGTTCGTCACTATACAGGTATATGACTATAAGGAAATGACCCATTGAGCGAGAGCCTCTTTAAGCAACCCTTTTGAACCTCTGTTTTGAAGCCTTTGAGAATGCTGCCCCCACTCAGTCTGGGCCAGTGTCGCAGAGAATATCTTTTCCCAGCTCGACTCTGGCTGGGGGAGGGTTTTAAACGTAACACTGAGACATCAGCTGTCCCGAACTCAGACATGTAAAATTTGTCATTGAGCTGTTGTCTGTTCTGGTTTCTTTTTATTCTGGGGCCATGTCATATTTTCACAGGTATGATTCTGATTGATGGCTTTTATATAGGTCTGCAGACCtcagcgtttcttattggacaagaccaggtagtccctccctgtttcagtccattttctacCGTTTGCTACCTAATGAATAGGGGTCTCTgttccagtatcctttaatgtcACTATAGCATACCACTTAGAATGTATGTCCAATAATGTATGTCCAATAAACATGTACGTTCTAAGTAGTGTGTAAATCTGGACATAGGTTGAAGTGTCCTACACCCAGGCCCTACACAGGAGTTCACCCAGGCCCTACACAGGAGTTCACCCAGGCCCTACACAGGCTCTGCAGGAGTTCACCCAGGTCAAGTCGGGCACCACGTCTTTGACCTACAACCAAGCAGACTCAGccaagggagggaggaaaagcaTGCAGACAGTTTTTTGCATAATACAAGCAGGTTGACGTGTGTAATCTCTGGATAATCTGTAGCCATTTTAGTATTCTTCTCAGTGACAACTCAGCCTCCTGCAATCCTCCCAACAATAGACAATCAACCGAGAATGTCTCTATGTACCCATATGTCTCTCTACCACCAGTAGTTTATTGTCCATGTAATAAAATGGGGTCATATATTGGGGGTGTATTTGACATGGATCTGCTTTGAAACACTACGCACGCCATCATGATTGAGGTCCTTATTTTTTCTAAAAGAGTTATTGTAAATAAAGAACCATGAGTGCGGTACATGTCTCGGCTGATCTTTTAAAACTTTTCCTGgcccgtattcataaagcgtctcgaagtaggagtgctgatctagggtcaggtCCCTCTTTCCATATAATCATATGGTCTAAACAGCTCAACTGACTCTAGACCAGTGCCCAATCACTTTGTAGAAGACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356201 lncRNA upstream 33038 56084868 ~ 56088189 (+) True LOC110485236
TU1356180 lncRNA upstream 94626 55985629 ~ 56026601 (+) True G1189054
TU1356163 lncRNA upstream 96460 55955185 ~ 56024767 (+) False G1189044
TU1356189 lncRNA upstream 97743 56010936 ~ 56023484 (+) True G1189058
TU1356162 lncRNA upstream 98703 56012049 ~ 56022524 (+) False G1189044
TU1356265 lncRNA downstream 23892 56147642 ~ 56148404 (+) True G1189112
TU1356240 lncRNA downstream 37081 56160831 ~ 56161860 (+) True G1189093
TU1356283 lncRNA downstream 54447 56178197 ~ 56179439 (+) True G1189128
TU1356291 lncRNA downstream 70923 56194673 ~ 56195341 (+) True G1189134
TU1356352 lncRNA downstream 178405 56302155 ~ 56303161 (+) True G1189182
XM_036941585.1 mRNA upstream 1742 56114163 ~ 56119485 (+) False LOC110486855
XM_036941568.1 mRNA upstream 33034 56035640 ~ 56088193 (+) False LOC110485236
XM_036941569.1 mRNA upstream 33034 56035640 ~ 56088193 (+) False LOC110485236
XM_036941578.1 mRNA upstream 205323 55834111 ~ 55915904 (+) True LOC110538766
XM_036941586.1 mRNA upstream 688018 55424865 ~ 55433209 (+) False LOC110538788
XM_036941590.1 mRNA downstream 472871 56596621 ~ 56674315 (+) True LOC110538765
XM_036939771.1 mRNA downstream 554852 56678602 ~ 56679864 (+) True LOC118938096
XM_036941591.1 mRNA downstream 564833 56688583 ~ 56919047 (+) False LOC118938331
XR_005035611.1 mRNA downstream 836848 56960598 ~ 56963017 (+) True LOC110486865
XM_036941601.1 mRNA downstream 884250 57008000 ~ 57019247 (+) True LOC110517037
TU1356156 other upstream 181870 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 754911 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 998608 55121261 ~ 55122619 (+) True G1188386
TU1355297 other upstream 1123932 54993674 ~ 54997295 (+) False G1188344
TU1356992 other downstream 712666 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 754178 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 930703 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 930717 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 930717 57054467 ~ 57055617 (+) False G1189819

Expression Profile