RNA id: TU1356627


Basic Information

Item Value
RNA id TU1356627
length 544
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1189423
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56381709 ~ 56382252 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gccctgcaatgccaagagctgagcaaagaaaatagtcccctcatccagctggtcctggggctgagttcacaaacctgttctactaacacactgaagcctcaggaccagaacatccaatcaatcagaataaaccaaattacacaGAGTCCAAACAAAACGAcgttgcttattgggaaacacaagcacaaacaaagcaaaatgcagtgcttcTTGGCCCTAAATGGACTGTACACCGTGGCTAACtgtttgaccatggttactgatcaaaaccttagaaaaaccttgacaaagtacaggctcagtgagcacagccttgccattgagaagggtagacacaggaaaacctggctccctgtagaggaaaggctgtgcaaccactgcaacacagcagaacctggctccctgtagaggaaaggctgtgcaaccactgcaacacagcagaacctggctccctgtagaggaaaggctgtgaaaccactgcacaacagcagaacctggctccctgtagaggaaaggctgtgcaaccactgcaccacagcagaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356609 lncRNA upstream 30122 56350082 ~ 56351587 (+) True G1189405
TU1356352 lncRNA upstream 78548 56302155 ~ 56303161 (+) True G1189182
TU1356291 lncRNA upstream 186368 56194673 ~ 56195341 (+) True G1189134
TU1356283 lncRNA upstream 202270 56178197 ~ 56179439 (+) True G1189128
TU1356240 lncRNA upstream 219849 56160831 ~ 56161860 (+) True G1189093
TU1356640 lncRNA downstream 8735 56390987 ~ 56391290 (+) True G1189430
TU1356642 lncRNA downstream 9465 56391717 ~ 56392440 (+) True G1189432
TU1356644 lncRNA downstream 13634 56395886 ~ 56396185 (+) True G1189434
TU1356646 lncRNA downstream 15349 56397601 ~ 56397915 (+) True G1189436
TU1356649 lncRNA downstream 22975 56405227 ~ 56405480 (+) True G1189439
XR_005035606.1 mRNA upstream 258125 55424865 ~ 56123584 (+) False LOC110538788
XR_005035607.1 mRNA upstream 258125 55424865 ~ 56123584 (+) False LOC110538788
XR_005035608.1 mRNA upstream 258125 55424865 ~ 56123584 (+) False LOC110538788
XR_005035609.1 mRNA upstream 258125 55424865 ~ 56123584 (+) False LOC110538788
XM_021558682.2 mRNA upstream 260264 56114167 ~ 56121445 (+) True LOC110486855
XM_036941590.1 mRNA downstream 214369 56596621 ~ 56674315 (+) True LOC110538765
XM_036939771.1 mRNA downstream 296350 56678602 ~ 56679864 (+) True LOC118938096
XM_036941591.1 mRNA downstream 306331 56688583 ~ 56919047 (+) False LOC118938331
XR_005035611.1 mRNA downstream 578346 56960598 ~ 56963017 (+) True LOC110486865
XM_036941601.1 mRNA downstream 625748 57008000 ~ 57019247 (+) True LOC110517037
TU1356156 other upstream 442352 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 1015393 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 1259090 55121261 ~ 55122619 (+) True G1188386
TU1355297 other upstream 1384414 54993674 ~ 54997295 (+) False G1188344
TU1356992 other downstream 454164 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 495676 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 672201 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 672215 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 672215 57054467 ~ 57055617 (+) False G1189819

Expression Profile