RNA id: TU1356713


Basic Information

Item Value
RNA id TU1356713
length 353
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G1189499
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56493805 ~ 56494286 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATATACCATGTGTGTACTGAGTGTGTTCATACACTCAGGAAGATAACTTTGCAAAGGTGCAATCACAGGTACACAGATGCAAACATgtgtacggtgtccatattagtaCAGCCTCAATCTCAGCAGTCTAGTCTCCATACCagtgctctccaaccctgttcctggagagtcacactcctgtaggttttaactccaaccctgttcctggagaactaccctcctgtaggtttaaactccaaccctgttcctggagagtcaccctcctgtaggttttaactccaaccctgttcctggagagctaccctcttgtaggttttaactccaaccctgttcctggagagctaccatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356700 lncRNA upstream 50748 56442733 ~ 56443057 (+) True G1189487
TU1356652 lncRNA upstream 85071 56408436 ~ 56408734 (+) True G1189442
TU1356649 lncRNA upstream 88325 56405227 ~ 56405480 (+) True G1189439
TU1356646 lncRNA upstream 95890 56397601 ~ 56397915 (+) True G1189436
TU1356644 lncRNA upstream 97620 56395886 ~ 56396185 (+) True G1189434
TU1356828 lncRNA downstream 154287 56648573 ~ 56650112 (+) True G1189598
TU1356837 lncRNA downstream 168382 56662668 ~ 56663270 (+) True G1189607
TU1356900 lncRNA downstream 188190 56682476 ~ 56682882 (+) True G1189668
TU1356902 lncRNA downstream 208542 56702828 ~ 56722853 (+) False G1189670
TU1356903 lncRNA downstream 208542 56702828 ~ 56752737 (+) True G1189670
XR_005035606.1 mRNA upstream 370221 55424865 ~ 56123584 (+) False LOC110538788
XR_005035607.1 mRNA upstream 370221 55424865 ~ 56123584 (+) False LOC110538788
XR_005035608.1 mRNA upstream 370221 55424865 ~ 56123584 (+) False LOC110538788
XR_005035609.1 mRNA upstream 370221 55424865 ~ 56123584 (+) False LOC110538788
XM_021558682.2 mRNA upstream 372360 56114167 ~ 56121445 (+) True LOC110486855
XM_036941590.1 mRNA downstream 102335 56596621 ~ 56674315 (+) True LOC110538765
XM_036939771.1 mRNA downstream 184316 56678602 ~ 56679864 (+) True LOC118938096
XM_036941591.1 mRNA downstream 194297 56688583 ~ 56919047 (+) False LOC118938331
XR_005035611.1 mRNA downstream 466312 56960598 ~ 56963017 (+) True LOC110486865
XM_036941601.1 mRNA downstream 513714 57008000 ~ 57019247 (+) True LOC110517037
TU1356156 other upstream 554448 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 1127489 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 1371186 55121261 ~ 55122619 (+) True G1188386
TU1355297 other upstream 1496510 54993674 ~ 54997295 (+) False G1188344
TU1356992 other downstream 342130 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 383642 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 560167 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 560181 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 560181 57054467 ~ 57055617 (+) False G1189819

Expression Profile