RNA id: TU1356903



Basic Information


Item Value
RNA id TU1356903
length 314
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1189670
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56702828 ~ 56752737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtgttatagtatcaccaggatgtgaactactgtaacatttcagtgtgttatagtgtcaccaggatgtgaactactgtaacagttcagtgtgttatagtgtcaccaggatgtgaactactgtaacagttcagtgtgttatagtgtcaccaggatgtgaactactgtaacagttcagtgtgttattgtgtctcttacaaagacatgaaatactgtaacagttccgtgtgttattatgtctgtaggaggtgaactactgtagcagttcagtgtgtcatagtgtctctctctaggaggtgacctactgtaacagttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1356900 lncRNA upstream 19946 56682476 ~ 56682882 (+) True G1189668
TU1356837 lncRNA upstream 39558 56662668 ~ 56663270 (+) True G1189607
TU1356828 lncRNA upstream 52716 56648573 ~ 56650112 (+) True G1189598
TU1356713 lncRNA upstream 208542 56493805 ~ 56494286 (+) True G1189499
TU1356700 lncRNA upstream 259771 56442733 ~ 56443057 (+) True G1189487
TU1356938 lncRNA downstream 4977 56757714 ~ 56761946 (+) True G1189697
TU1356943 lncRNA downstream 12699 56765436 ~ 56785201 (+) True G1189701
TU1356945 lncRNA downstream 14308 56767045 ~ 56768348 (+) True G1189702
TU1356954 lncRNA downstream 33478 56786215 ~ 56788399 (+) True G1189707
TU1356958 lncRNA downstream 40820 56793557 ~ 56798251 (+) True G1189711
XM_036939771.1 mRNA upstream 22964 56678602 ~ 56679864 (+) True LOC118938096
XM_036941590.1 mRNA upstream 28513 56596621 ~ 56674315 (+) True LOC110538765
XM_021558682.2 mRNA upstream 581383 56114167 ~ 56121445 (+) True LOC110486855
XM_036941585.1 mRNA upstream 583343 56114163 ~ 56119485 (+) False LOC110486855
XM_036941569.1 mRNA upstream 614635 56035640 ~ 56088193 (+) False LOC110485236
XR_005035611.1 mRNA downstream 207861 56960598 ~ 56963017 (+) True LOC110486865
XM_036941601.1 mRNA downstream 255263 57008000 ~ 57019247 (+) True LOC110517037
XM_036941602.1 mRNA downstream 266965 57019702 ~ 57027740 (+) False LOC110516169
XM_021558689.2 mRNA downstream 296195 57048932 ~ 57053449 (+) False LOC110486862
XM_036941603.1 mRNA downstream 296195 57048932 ~ 57053449 (+) True LOC110486862
TU1356156 other upstream 763471 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 1336512 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 1580209 55121261 ~ 55122619 (+) True G1188386
TU1355297 other upstream 1705533 54993674 ~ 54997295 (+) False G1188344
TU1356992 other downstream 83679 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 125191 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 301716 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 301730 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 301730 57054467 ~ 57055617 (+) False G1189819

Expression Profile