RNA id: TCONS_00042896


Basic Information

Item Value
RNA id TCONS_00042896
length 773
RNA type processed_transcript
GC content 0.46
exon number 5
gene id XLOC_021613
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19217528 ~ 19218940 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTGTGTTGCTGTCAGATGCATGAGAGTACATATTGGGAAGTAGATGTTTGAGATTGTCTAGCATGTACTCTGTGAAGCTGATGCACATCTCCTGCTCCTCAAGCATTGTGGGGCCTTAAGGAACATGAAAGATGATTGGTCCAAAGACTATAGACAGGTTGGTGGTGGTCATGCAGTTGACTCCACTATTAGCAACCACACGGGAAAGGAAGAATGCTAAATAGCAGAGGATGTTAAAATGGTCCTCTGGAAGGCTGTCCAGGATTTTTTTCACCGCCTGGTGAGGTTTGCTCAGTTTAAAGATCCTGAACACCTCCAGCAGCTCAATCATGAGTGGCCCTGAAATGAAACCACCGGGAGGCACTCAGAGGAAATGTTTTAAGACGGAGGCTGAGGAATGAACACCCTCAATCTTCAGCTCTGGAAAGCCACCCTTGATCAAAACATCTCCTCAGCTCATACTGGCACAACAGTATCCCATCAACCCTAAACAGGCCGCTTGTATCGAGGcCATGCTTCTCCAGGAAGCCCAATAAATGTGTGAGGAATAAAGGAAGCCCTGCCTCATCTGACTGTTGTTCCTAAGATAGGACAAAGGCACACCCAACACTTTACTCAGTGTTTCCTCACACACTGATAAAACTCCCATTATGGGGTTTTGCCGAGTTGGCAAACAAATCCGAGGGGTGTCCAAAGCCGTGAGTCAAATCCAGAAAAGAGTCAAAAACAGAGAATCAATAGCCGCAATCAATAGTAAAATCGCAAACCGCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000138534

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042893 lncRNA upstream 17335 19198361 ~ 19200193 (+) True XLOC_021610
TCONS_00042889 lncRNA upstream 35140 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042888 lncRNA upstream 35140 19177894 ~ 19182388 (+) False XLOC_021608
TCONS_00042886 lncRNA upstream 37090 19177891 ~ 19180438 (+) False XLOC_021608
TCONS_00042890 lncRNA upstream 38095 19178596 ~ 19179433 (+) True XLOC_021608
TCONS_00044812 lncRNA downstream 254456 19473396 ~ 19476151 (+) True XLOC_021614
TCONS_00042902 lncRNA downstream 375299 19594239 ~ 19600895 (+) False XLOC_021616
TCONS_00042904 lncRNA downstream 375299 19594239 ~ 19603908 (+) False XLOC_021616
TCONS_00042903 lncRNA downstream 375516 19594456 ~ 19598321 (+) False XLOC_021616
TCONS_00042905 lncRNA downstream 378736 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042894 mRNA upstream 11109 19202636 ~ 19206419 (+) True XLOC_021611
TCONS_00042892 mRNA upstream 16200 19198244 ~ 19201328 (+) False XLOC_021610
TCONS_00042891 mRNA upstream 29712 19182819 ~ 19187816 (+) True XLOC_021609
TCONS_00042884 mRNA upstream 98085 19106148 ~ 19119443 (+) False XLOC_021607
TCONS_00042885 mRNA upstream 98928 19106188 ~ 19118600 (+) True XLOC_021607
TCONS_00042897 mRNA downstream 339634 19558574 ~ 19583814 (+) False XLOC_021615
TCONS_00042899 mRNA downstream 345452 19564392 ~ 19582403 (+) True XLOC_021615
TCONS_00042900 mRNA downstream 371066 19590006 ~ 19604413 (+) False XLOC_021616
TCONS_00042901 mRNA downstream 371658 19590598 ~ 19603695 (+) False XLOC_021616
TCONS_00042906 mRNA downstream 387351 19606291 ~ 19652915 (+) True XLOC_021617
TCONS_00042887 other upstream 35140 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042879 other upstream 486129 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042875 other upstream 526046 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042869 other upstream 928327 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042854 other upstream 1343381 17874072 ~ 17874147 (+) True XLOC_021587
TCONS_00042898 other downstream 341134 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042916 other downstream 576498 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042917 other downstream 582196 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042920 other downstream 594765 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other downstream 594779 19813719 ~ 19821463 (+) False XLOC_021624