RNA id: TCONS_00044812


Basic Information

Item Value
RNA id TCONS_00044812
length 2756
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id XLOC_021614
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19473396 ~ 19476151 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGATGAAATATAGAAAGAGAAAGAGTGTTTTAAACAAATTCGTACACATTGTTTTCAGAGACagagctgtttatctgttagTAACATTTGTAAAATGCCCTGAGAAATATTCTACAGAACTGCAGCTAATCAGATTCATGTTAAGGGCAAATTGAATCACTGTTTTTAAATCAAGGTGCATAAATTTCAgaatatatttaacaaaaaaaaaaattgtttttgacAAACACCGCATCAGCTTCAGACCAGCAGAATTCATTAGGAAATGGTGCCCTCTGCTGGTCAGCTTTTAAACCGCTAGGTTAAATACTTGCCAATGCACATTATGAAACAACATTGGCAttcattaatcacatttaaaagaaaatctaatcATTTCTTATATAGCGTCATAAATATCTATGTACATGTACAAAGAGTTCACACATTTGTGCTTTTGATTTAATACTGAACAGGACATCATGTTTGATACAACCTTGTTTTAATATAACATCTGTACAACCAAGAATGTAAAAAAACCAAAAACAGCTAAAATGAAGAATGACTCACttttcatcttttaaaaaaatattgtctgcATTTTGCTCCTTGTTCAcaaaccgttttttttttctccttgaaAATCCAAACAAAAAGTATTGACAAAAATGAAACATTGAAAGGCAATTACATTTCTTGGCAATATAAATATAGTGGTATGAACAAGGTTTTTCAAACATCTCATTTAGGAAGAGCATTACCGAAAACAGTGAAAATCTGGCCACCGTCTGAGTCACTATCTCATTAATACGAAACCAGATTTCATTTTTCCTTTATTTCAGATATTTGATGTGCTCTTATTGTTAAGTATGTACATTCCTAATGCCAGTAGTCTATGAGGGAGCATGGCATCCCAATGGCATTCAGTTGTAAGTGTAGTCCGAATAGTAGTCTGACCGTCCACCCCCTCCCCTCCCAGGCGGGTAGCCCCAATTACAGGATGGGCCTCCTCTGATGTGACCCCTACCCGGTCTAGATCTCATAGGGTGCGGTGGAACTCCTCGACCCCTGAAGCCACCCCGCATCATATCAGGGGGACCCCCTCTGGGATTGTACATGCTATTGTTGTGTCCACCTCGGCACATGGCTCCCATTGGAGCTCCAGGGAGGGGTAAGAGTCCTCTGCTGGAAATGCCACCCCTGGCAGGAGGGGCTTGACTGCCACCCTGACTCTCTGATGACGAGTTCACTGGAGTTCTGCTGCCTTGGCTGCAAGAACTTGAACTAGCCAATGCACTGTCTTTCTCTCCGATGCCCTCTTGCTGTCCTACTTTAGAGGTGCTTGAAGTCATGGCCTTTTCTTCCTCTTGTTCCTGAGAGGTCCCACTCTCTGTGGCTCCTATCCATGATCCATCTGTGGGTTTTGCGGCCTCAGACTGGGTTGAAGGTAAAGCACTAAATCCTGCCCCGCTCTGTCCAGCCGTGAAACTGTGCTGGCCTCCTGGTGTGGGACCCCAGTTGTAAAGCGGTGGAACAGGGGGAATTGGAGTGAGGGCTGGAAAGAGTGTGGATTCTGGGTAAGAGGGAAAAGTGGTGCGAATAGAGGATGAAGAAAAAGTAGAAGATGAAGATGGAGTCTCTACATCTTTCTTAATGGTTTGAGAGCCTGGATGTCCTTGCTTATTAGCAGTGATTGCCATTTCCACCCCAGGCACTCCCACACTGTCAGCAATGTGTCCAGGTGGTTGAAGAGACGAGACTGATTCTGGAACAGGAGGCAGCACCTCCACTAAGCTAACCGGGGGCTGAGGGAAGGATGGGGGAATGGGAAGCGGTTGGCCAATGGGTAGGGTCAGGGTGTTTGCAGGAGGTGGGACCCCAGGAGGAGCAACACTTTGACTATAATCTGATCCCCTGGAAGCCACTTGGACTGGAGATGAATATGCTGAGGACATGTGGTATGCAGGAGAACCAGAGTAAGGGCTCCACTGTGATGAACTGGGACACAGGTAGCTCTGGTGGGGGTTCACACCGAAACTGGTCAGGGTGTCCTCTACTTCAGGCCTAGATGCACTCTCTTGACTGGCAGCTTTATAAAGAGCTATGGCAGACTTCAAAGCTGCGTAATCTGAGAAAGAGCCCTGGCTAGGGCACATAGAGGGGTTTGGAAGAACAAGTGGATCCATTATGGGGTCCAAAGATGGTTGGTTAGGAAGGGGAGGACGAAATCCATCGGTCTGGGGTGGAGGGGGTTGAGGTGCATGTGGTTCTGTTAGGTCTTTTTCTGTCTGAATGTTAGTATCGGAGACTGGCATGTCATCTTCAGAGTCTATAGACATGTCCTCTTCATCGCGAACAGCATCAGGCTCCACTGAGCAATCAAATAAATGACAAAGTGTTAAAATCAAAATCTATCATTTCTTTGTGAATTCTGTCAGGAAAAGAAGATCAAGAGTTTACCTGGATTAGGTAGGACAGCCACTGTAACGTCTTCAGGGATACTGATCAAACTCTGAAAGTTGTTCATTATGTCATTCATACCTGCAATGATGACTCCACTACCAGAGAACTGAGAGAATTTGTCATCGTGTCTTTctgtaaatgtaaagaaaaaaacaatttagcAAACTCTGCAGACAACTGCACATATCATCGCTATTGCACCACAGTCATATTAATCAACAAAAAGAGGACTAAATCACCTGAACGTGTAGTGCTACAGACAAAGGAAACAGAATTGCTGctaaggctgtactcacactaggtacagttgcct

Function

GO:

id name namespace
GO:0043966 histone H3 acetylation biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042893 lncRNA upstream 273203 19198361 ~ 19200193 (+) True XLOC_021610
TCONS_00042889 lncRNA upstream 291008 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042888 lncRNA upstream 291008 19177894 ~ 19182388 (+) False XLOC_021608
TCONS_00042886 lncRNA upstream 292958 19177891 ~ 19180438 (+) False XLOC_021608
TCONS_00042890 lncRNA upstream 293963 19178596 ~ 19179433 (+) True XLOC_021608
TCONS_00042902 lncRNA downstream 118088 19594239 ~ 19600895 (+) False XLOC_021616
TCONS_00042904 lncRNA downstream 118088 19594239 ~ 19603908 (+) False XLOC_021616
TCONS_00042903 lncRNA downstream 118305 19594456 ~ 19598321 (+) False XLOC_021616
TCONS_00042905 lncRNA downstream 121525 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042914 lncRNA downstream 300309 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042895 mRNA upstream 252369 19213472 ~ 19221027 (+) True XLOC_021612
TCONS_00042894 mRNA upstream 266977 19202636 ~ 19206419 (+) True XLOC_021611
TCONS_00042892 mRNA upstream 272068 19198244 ~ 19201328 (+) False XLOC_021610
TCONS_00042891 mRNA upstream 285580 19182819 ~ 19187816 (+) True XLOC_021609
TCONS_00042884 mRNA upstream 353953 19106148 ~ 19119443 (+) False XLOC_021607
TCONS_00042897 mRNA downstream 82423 19558574 ~ 19583814 (+) False XLOC_021615
TCONS_00042899 mRNA downstream 88241 19564392 ~ 19582403 (+) True XLOC_021615
TCONS_00042900 mRNA downstream 113855 19590006 ~ 19604413 (+) False XLOC_021616
TCONS_00042901 mRNA downstream 114447 19590598 ~ 19603695 (+) False XLOC_021616
TCONS_00042906 mRNA downstream 130140 19606291 ~ 19652915 (+) True XLOC_021617
TCONS_00042896 other upstream 254456 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042887 other upstream 291008 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042879 other upstream 741997 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042875 other upstream 781914 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042869 other upstream 1184195 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042898 other downstream 83923 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042916 other downstream 319287 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042917 other downstream 324985 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042920 other downstream 337554 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other downstream 337568 19813719 ~ 19821463 (+) False XLOC_021624

Expression Profile

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