RNA id: TCONS_00042898


Basic Information

Item Value
RNA id TCONS_00042898
length 645
RNA type processed_transcript
GC content 0.48
exon number 5
gene id XLOC_021615
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19558574 ~ 19583814 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTAATTACCTTCAGAAAGATCCTACTTAGTCTGTCTGGGTGTGAACAGTCTGGATGTGATTCATTTGCAGTCGCTGTGTTCCACTAAAACGTCCTTGCCCTGAAAATGACTCCCCAAActggctgcttacctccatgtgaactgcttttccgctgttaccagtttgtccagttagcgcACCATGTaagtcggcggacttgagacacaaggaggagttgaccacgacaacgggGTTTAAGTccagcaaagaacggttccagaaagcagATGGAGAACATGTTGAGAGTCCAAGTGCCTCACACGAGGAGAGTTATTCGCCTGCAGCTGAAAATCCACTCAGAAGAATACTGCAGCCTTACGGTTGGCATCTGCATGCCCAGCCCAGAACCAAGAGGAAGTTACTACAGTCTACCAGCTCGGGACCCTACTCTCCACTGACTGTAGCTTACAACGGCAAGATCTGTATCCTGTTCAAAGCTAAGAGACTGGCTATTCGATACAGGAACAACACTTTCCTGGACCTTACAGAGAGGGTGTTTGGATCCAGCGCACAAGTGGACACCAAAGGCTCTGTTTGTACAAAAGAGAAGGCCACGCTATCTTTGCGTTTGGGTGATGTGGAAGATATCAAGGGACTTGTCAT

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0030641 regulation of cellular pH biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0033181 plasma membrane proton-transporting V-type ATPase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-117 Predicted to be involved in regulation of cellular pH. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of plasma membrane proton-transporting V-type ATPase complex. Orthologous to human ATP6AP1L (ATPase H+ transporting accessory protein 1 like (pseudogene)).

Ensembl:

ensembl_id ENSDART00000142479

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044812 lncRNA upstream 83923 19473396 ~ 19476151 (+) True XLOC_021614
TCONS_00042893 lncRNA upstream 359881 19198361 ~ 19200193 (+) True XLOC_021610
TCONS_00042889 lncRNA upstream 377686 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042888 lncRNA upstream 377686 19177894 ~ 19182388 (+) False XLOC_021608
TCONS_00042886 lncRNA upstream 379636 19177891 ~ 19180438 (+) False XLOC_021608
TCONS_00042902 lncRNA downstream 16993 19594239 ~ 19600895 (+) False XLOC_021616
TCONS_00042904 lncRNA downstream 16993 19594239 ~ 19603908 (+) False XLOC_021616
TCONS_00042903 lncRNA downstream 17210 19594456 ~ 19598321 (+) False XLOC_021616
TCONS_00042905 lncRNA downstream 20430 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042914 lncRNA downstream 199214 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042895 mRNA upstream 339047 19213472 ~ 19221027 (+) True XLOC_021612
TCONS_00042894 mRNA upstream 353655 19202636 ~ 19206419 (+) True XLOC_021611
TCONS_00042892 mRNA upstream 358746 19198244 ~ 19201328 (+) False XLOC_021610
TCONS_00042891 mRNA upstream 372258 19182819 ~ 19187816 (+) True XLOC_021609
TCONS_00042884 mRNA upstream 440631 19106148 ~ 19119443 (+) False XLOC_021607
TCONS_00042900 mRNA downstream 12760 19590006 ~ 19604413 (+) False XLOC_021616
TCONS_00042901 mRNA downstream 13352 19590598 ~ 19603695 (+) False XLOC_021616
TCONS_00042906 mRNA downstream 29045 19606291 ~ 19652915 (+) True XLOC_021617
TCONS_00042907 mRNA downstream 78055 19655301 ~ 19661674 (+) False XLOC_021618
TCONS_00042908 mRNA downstream 78110 19655356 ~ 19667758 (+) True XLOC_021618
TCONS_00042896 other upstream 341134 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042887 other upstream 377686 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042879 other upstream 828675 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042875 other upstream 868592 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042869 other upstream 1270873 18289074 ~ 18289201 (+) True XLOC_021598
TCONS_00042916 other downstream 218192 19795438 ~ 19799039 (+) False XLOC_021623
TCONS_00042917 other downstream 223890 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042920 other downstream 236459 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other downstream 236473 19813719 ~ 19821463 (+) False XLOC_021624
TCONS_00042927 other downstream 610379 20187625 ~ 20187739 (+) True XLOC_021627

Expression Profile

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