RNA id: TU1357091


Basic Information

Item Value
RNA id TU1357091
length 1103
RNA type TUCP
GC content 0.47
exon number 2
gene id G1189819
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57054453 ~ 57055617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATTCCAGATGCATTTGTAATCATGACAAACAAAATGTGTTGTTTATGTGGAAGAGCAGGACTGCACAACAACATACAAATATAAAAATTCACAAGCACTGGTTTCTGTTGAAGAATGGGGAAGAAGTTACAGGTAGAGCCTCGACAATTTCTGACCTCTAGTAGCAGGCTTCCACTAGGTACCAGTAGCAGGCTTCCACTAGGTACCATTAGCAGGCTTCCAATAGCACCCAGAGTTTTTCCCGATGAGCTAACATGGTCAAGAAAAACTTGTGGCACTATTTATGAAAAATTACACGGTTTTCCAAAATGGCTGCCAGCCAGGCCTATCAACCTCAAAACCAGTTTATTATAAAAGGTCGTTCAGGACCTGCTTCTCTGTCCGTCAGTGTCTATAAAGCCACACTGTTGCTCCAGGCAGTGGTCCATGCTGAAGGAGACTCCCGCGGGTTCACACTCATGGAATCCTTAGTGGGCTTGATGTCAGACAGTCTGCCATCAGCTGATGATTGCCTGGAGGGGTGGAAGGGACGCTGCAGACAGGAGGATCTCAGCCTCTGTTTGGTCTCCTCGGTCCTTCTCTCTTGAACTCTCCTCACTGCCAGAGTGATGGTTGCCATTTTTTTTCCCGTTCTGTCCATTTTCTTCCCTTTGTCCCCTGACTGAGGCTTTCCTGGTGATACtgacttcatcatcatcatcatcatcctccatGTTGGCCGGGCAGTTGGTATCTTCCTCGAGACCATCGTCCTCCTCCGCCTCTCCctcattccatctctcctctccatccctctgttcctTAGTCCCATCTCCACCCTCACCTGGTCGCTTGTCAATCATGAACAGGGGGTGTGGCACCTGAAGAGAGGCGGTGTCCATCTCCTCATCCTGCGAGTCCATACTGTAAAAGGATATGACATCACACATCAGCAACAAACAAAGGAGGTCAAATATCCATATAATTCACGTGTCACACAGACCCATGTTTGCTCTGCCGTATTTCCTGAAGCTGGACTCTAGCTGGATTCTTATTGGGTCTTAAGACCATGTTGAAGAATTAGGCTCTGCTGCATACTTCCTATCACATCATACATTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357089 lncRNA upstream 77 57054160 ~ 57054390 (+) True G1189818
TU1357086 lncRNA upstream 5986 57047988 ~ 57048481 (+) True G1189816
TU1357070 lncRNA upstream 26726 57027047 ~ 57027741 (+) True LOC110516169
TU1357073 lncRNA upstream 36767 57017476 ~ 57017700 (+) True G1189804
TU1357072 lncRNA upstream 40621 57013576 ~ 57013846 (+) True G1189803
TU1357098 lncRNA downstream 1351 57056968 ~ 57057222 (+) True G1189822
TU1357100 lncRNA downstream 1933 57057550 ~ 57058011 (+) True G1189823
TU1357109 lncRNA downstream 18968 57074585 ~ 57074861 (+) True G1189832
TU1357111 lncRNA downstream 20251 57075868 ~ 57079580 (+) False G1189833
TU1357110 lncRNA downstream 23340 57078957 ~ 57079580 (+) True G1189833
XM_021558689.2 mRNA upstream 1018 57048932 ~ 57053449 (+) False LOC110486862
XM_036941603.1 mRNA upstream 1018 57048932 ~ 57053449 (+) True LOC110486862
XM_036941602.1 mRNA upstream 26727 57019702 ~ 57027740 (+) False LOC110516169
XM_036941601.1 mRNA upstream 35220 57008000 ~ 57019247 (+) True LOC110517037
XR_005035611.1 mRNA upstream 91450 56960598 ~ 56963017 (+) True LOC110486865
XM_036941607.1 mRNA downstream 30231 57085848 ~ 57089925 (+) False LOC110486876
XM_036941606.1 mRNA downstream 30232 57085849 ~ 57089925 (+) False LOC110486876
XM_036941609.1 mRNA downstream 30237 57085854 ~ 57089925 (+) False LOC110486876
XM_036941608.1 mRNA downstream 30239 57085856 ~ 57089925 (+) True LOC110486876
XM_036941612.1 mRNA downstream 34684 57090301 ~ 57092931 (+) False LOC110515850
TU1356914 other upstream 128860 56877928 ~ 56925607 (+) True G1189675
TU1356992 other upstream 217471 56836416 ~ 56836996 (+) True G1189738
TU1356156 other upstream 1115110 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 1688151 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 1931848 55121261 ~ 55122619 (+) True G1188386
TU1357171 other downstream 540403 57596020 ~ 57640558 (+) True LOC110514101
TU1357163 other downstream 568056 57623673 ~ 57625405 (+) True LOC110486909
TU1358002 other downstream 909899 57965516 ~ 57994502 (+) False G1190568
TU1358009 other downstream 910265 57965882 ~ 57993981 (+) False G1190568
TU1358006 other downstream 922802 57978419 ~ 57993981 (+) False G1190568

Expression Profile