RNA id: TU1358004


Basic Information

Item Value
RNA id TU1358004
length 1307
lncRNA type read_through
GC content 0.64
exon number 2
gene id G1190568
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57950494 ~ 57994502 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacgctccacctccccgacaaagcgggcgagacgggccggtggtgcgcccgaccccgtagggtcgggatcccacctcagccgacacgcgccggccctcactttcattgcgccacggggtgtgttcggagaaaaccctctgacttgcgcatgcgttagactccttggtccgtgtttcaagacgggtcgggtgggttgccgacatcgccgctgacccctggcgccagttgacgtgagccgatccctaccctggcgacgcaacgcggttgggtacgcactgaggacagtccgacccggttgacagtcgcgccgggggcaaggggccccgtgcccccccgcagggggacatgacgcagcgggtactaagtcctcggccccggaaagcggcgagtacggagcaggggcgctgtaaagctcacggccgaaaccggtagccaccttcgccccaagcccttccaagccgacatcgccgctgacccctggcgccagttgacgtgagccgatccctaccctggcgacgcaacgcggttgggtacgcactgaggacagtccgacccggttgacagtcgcgccgggggcaaggggccccgtgcccccccgcagggggacatgacgcagcgggtactaagtcctcggccccggaaagcggcgagtacggagcaggggcgctgtaaagctcacggccgaaaccggtagccaccttcgccccaagcccttccaagccgacccagagccggtcgcggcgcaccaccgacagaggaaatgcgcccggcgggggccgagcccgaccagggatcagtcccacgaggggatccgaccacaccggaacggccgaccctgacccgccgagttgaatcctccgggcagactgcgcggaccccacccgtttacctctcaacggtttcacgccctcttgaactctctcttcaaagttcttttcaactttcccttacggtacttgtcgtctatcggtctcgtgacggtatttagccttagatggagtttaccacccgctttgggctgcattcccaagcaacccgactctgaaaagaccggaccccggcgcgacgggggccgttaccggcctcacaccgtccacgggctgagcctcgatcagaaggactcaggcccccgatcgacaccgggcaaagcggtcttctatacaccacatttcccgtgcccgccagacggacagggattcggtgttgggctcttccctcttcgctcgccgctactgagggaatcctggttagtttcttttcctccgcttagtaatatgcttaaattcagcgggttgtctcgtctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357953 lncRNA upstream 59734 57906159 ~ 57906387 (+) True G1190544
TU1357952 lncRNA upstream 60452 57905445 ~ 57905669 (+) True G1190543
TU1357942 lncRNA upstream 66987 57898286 ~ 57899134 (+) False G1190536
TU1357973 lncRNA downstream 2401 57982490 ~ 58000260 (+) False G1190550
TU1357966 lncRNA downstream 5146 57985235 ~ 58000260 (+) False G1190550
TU1357968 lncRNA downstream 5146 57985235 ~ 58000260 (+) False G1190550
TU1357970 lncRNA downstream 5146 57985235 ~ 58000260 (+) False G1190550
TU1357972 lncRNA downstream 5146 57985235 ~ 58000260 (+) True G1190550
XM_036941682.1 mRNA upstream 108127 57847447 ~ 57857994 (+) True LOC110486929
XM_036941680.1 mRNA upstream 120413 57838961 ~ 57845708 (+) True LOC110486928
XR_005035832.1 mRNA upstream 145290 57820761 ~ 57820831 (+) True LOC118938625
XR_005035830.1 mRNA upstream 148891 57817160 ~ 57817230 (+) True LOC118938623
XR_005035833.1 mRNA upstream 150612 57815439 ~ 57815509 (+) True LOC118938626
XM_036941684.1 mRNA downstream 69273 58049362 ~ 58052530 (+) True LOC110512521
XM_021558795.2 mRNA downstream 74936 58055025 ~ 58058043 (+) True LOC110486927
XM_036941685.1 mRNA downstream 103173 58083262 ~ 58110194 (+) False LOC110485250
XR_005035614.1 mRNA downstream 103173 58083262 ~ 58110194 (+) True LOC110485250
XM_036941691.1 mRNA downstream 151196 58131285 ~ 58195479 (+) False LOC110486938
TU1357171 other upstream 325563 57596020 ~ 57640558 (+) True LOC110514101
TU1357163 other upstream 340716 57623673 ~ 57625405 (+) True LOC110486909
TU1357091 other upstream 910504 57054467 ~ 57055617 (+) False G1189819
TU1357092 other upstream 910504 57054467 ~ 57055617 (+) False G1189819
TU1357090 other upstream 910718 57054467 ~ 57055403 (+) False G1189819
TU1358173 other downstream 60797 58040886 ~ 58041295 (+) True G1190689
TU1358638 other downstream 556738 58536827 ~ 58538719 (+) True LOC110538555
TU1359148 other downstream 1287982 59268071 ~ 59270262 (+) True G1191444
TU1359241 other downstream 1406083 59386172 ~ 59388776 (+) True G1191529
TU1359354 other downstream 1645746 59625835 ~ 59626661 (+) True G1191622

Expression Profile