RNA id: TU1358439


Basic Information

Item Value
RNA id TU1358439
length 265
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G1190907
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58348150 ~ 58348501 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCCAGACTACTCCCCAGCCAGAGTTACCTTCTCCCCAGCCAGAGTTACCTTCTCCCCAGACTACTCCCCAGCCAGAGTTACCTTCTCCCCAGACTACTCCCCAGCCAGAGTTACCTTATCCCCAGCCAGAGTTACCTTCTCCCCAGACTACTCCCCAGCCAGAGTTACCTTCTCCCCAGCCAGAGTTACCTTCTCCCCAGACTACTCCCCAGCCAGAGTTACCTTCTCCCCAGACTACTCCCCAGCCAGAGTTACCTTCTCC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358412 lncRNA upstream 1942 58344037 ~ 58346208 (+) True LOC110514297
TU1358438 lncRNA upstream 13935 58333683 ~ 58334215 (+) True G1190906
TU1358430 lncRNA upstream 26992 58320208 ~ 58321158 (+) True G1190898
TU1358424 lncRNA upstream 28527 58318918 ~ 58319623 (+) False G1190897
TU1358428 lncRNA upstream 28527 58318918 ~ 58319623 (+) True G1190897
TU1358440 lncRNA downstream 2099 58350600 ~ 58351505 (+) True G1190908
TU1358526 lncRNA downstream 23380 58371881 ~ 58372099 (+) True G1190965
TU1358544 lncRNA downstream 43675 58392176 ~ 58392533 (+) True G1190978
TU1358545 lncRNA downstream 44774 58393275 ~ 58393561 (+) True G1190979
TU1358547 lncRNA downstream 47426 58395927 ~ 58396136 (+) True G1190981
XM_036941697.1 mRNA upstream 607 58312756 ~ 58347543 (+) False LOC110514297
XM_036941696.1 mRNA upstream 607 58312759 ~ 58347543 (+) False LOC110514297
XM_036941701.1 mRNA upstream 607 58312767 ~ 58347543 (+) False LOC110514297
XM_036941700.1 mRNA upstream 607 58315457 ~ 58347543 (+) False LOC110514297
XM_036941699.1 mRNA upstream 607 58328843 ~ 58347543 (+) False LOC110514297
XM_036939774.1 mRNA downstream 29 58348530 ~ 58349263 (+) True LOC118938097
XM_036941712.1 mRNA downstream 79871 58428372 ~ 58446189 (+) True LOC110486947
XM_036941716.1 mRNA downstream 172862 58521363 ~ 58557066 (+) False LOC110538555
XM_036941717.1 mRNA downstream 172862 58521363 ~ 58557066 (+) False LOC110538555
XM_036941718.1 mRNA downstream 172862 58521363 ~ 58557066 (+) False LOC110538555
TU1358173 other upstream 306855 58040886 ~ 58041295 (+) True G1190689
TU1358002 other upstream 353648 57965516 ~ 57994502 (+) False G1190568
TU1358638 other downstream 188326 58536827 ~ 58538719 (+) True LOC110538555
TU1359148 other downstream 919570 59268071 ~ 59270262 (+) True G1191444
TU1359241 other downstream 1037671 59386172 ~ 59388776 (+) True G1191529
TU1359354 other downstream 1277334 59625835 ~ 59626661 (+) True G1191622
TU1359499 other downstream 1564597 59913098 ~ 59914246 (+) True LOC110486998

Expression Profile