RNA id: TCONS_00042916


Basic Information

Item Value
RNA id TCONS_00042916
length 757
RNA type processed_transcript
GC content 0.49
exon number 5
gene id XLOC_021623
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19759128 ~ 19809027 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACTGTCATCACTGTGGATGCGAAGGCAGCTGGGAAGGGCAAGGTGACCTGTACCGTGTGCACACCTGATGGAGGCGAGGTGGATGTGGACGTCGTGGAAAATGAGGATGGAACGTTTGACATCTTTTACACTGCACCGCAGCCTGGGAAATACGTGATCTGTGTGCGCTTCGGTGGAGAGCACATCCCTAACAGCCCCTTCCAAGTCACGGCTACAGATGGGCAATTGGGTATGAATGGACTGGATGTAGCTGGACTGAGACCCTTTGACTTGGTCATTCCTTTCACCATTCAGAAAGGAGAAATTACAGGTGATGTACGAATGCCCTCTGGAAAAGTGGCCAAGCCTGATATTACAGACAACAAGGATGGCACAGTCACAGTGAAATATGCCCCAACTGAGGCGGGCCTGCATGAGATGGACATTAAATATGATGGAATACACATTCCAGGAAGTCCATTGCAATTCTACGTGGATTATGTCAACAGCGGTCATGTGACTGCATATGGTCCTGGTCTAATTCATGGCATGGTCAATAAGCCTGCAGTCTTCACAGTCAACACAAAGGATGCTGGAGAGGGTGGTCTGTCTCTGGCCATCGAGGGGCCATCAAAGGCAGATATCAGCTGCACTGATAATCAGGACGGTACCTGCACTGTTTCATACCTCCCTGTTCTTCCCGGAGACTACAATATCATTGTTAAATACAATGACAAGAACATCCCCGGCAGCCCTTTCATGTCCAAAATCACAGG

Function

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04510 Focal adhesion
ko05205 Proteoglycans in cancer
ko05132 Salmonella infection
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-2145 Predicted to enable actin binding activity. Human ortholog(s) of this gene implicated in X-linked recessive disease (multiple); bone development disease (multiple); heart valve disease (multiple); periventricular nodular heterotopia; and terminal osseous dysplasia. Orthologous to human FLNA (filamin A).

Ensembl:

ensembl_id ENSDART00000131809

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042914 lncRNA upstream 17282 19776460 ~ 19778156 (+) False XLOC_021623
TCONS_00042904 lncRNA upstream 191530 19594239 ~ 19603908 (+) False XLOC_021616
TCONS_00042905 lncRNA upstream 191530 19597676 ~ 19603908 (+) True XLOC_021616
TCONS_00042902 lncRNA upstream 194543 19594239 ~ 19600895 (+) False XLOC_021616
TCONS_00042903 lncRNA upstream 197117 19594456 ~ 19598321 (+) False XLOC_021616
TCONS_00042921 lncRNA downstream 14672 19813711 ~ 19816370 (+) False XLOC_021624
TCONS_00042925 lncRNA downstream 178290 19977329 ~ 19978737 (+) True XLOC_021625
TCONS_00044813 lncRNA downstream 546271 20345310 ~ 20361426 (+) True XLOC_021628
TCONS_00042939 lncRNA downstream 714102 20513141 ~ 20516174 (+) True XLOC_021633
TCONS_00042946 lncRNA downstream 845557 20644596 ~ 20649116 (+) True XLOC_021636
TCONS_00042912 mRNA upstream 83450 19701587 ~ 19711988 (+) True XLOC_021622
TCONS_00042911 mRNA upstream 99462 19691146 ~ 19695976 (+) True XLOC_021621
TCONS_00042910 mRNA upstream 117505 19675780 ~ 19677933 (+) True XLOC_021620
TCONS_00042909 mRNA upstream 121669 19670085 ~ 19673769 (+) True XLOC_021619
TCONS_00042908 mRNA upstream 127680 19655356 ~ 19667758 (+) True XLOC_021618
TCONS_00042918 mRNA downstream 14638 19813677 ~ 19822223 (+) False XLOC_021624
TCONS_00042919 mRNA downstream 14655 19813694 ~ 19821543 (+) False XLOC_021624
TCONS_00042923 mRNA downstream 15332 19814371 ~ 19816492 (+) True XLOC_021624
TCONS_00042924 mRNA downstream 178081 19977120 ~ 19981813 (+) False XLOC_021625
TCONS_00042926 mRNA downstream 311047 20110086 ~ 20112596 (+) True XLOC_021626
TCONS_00042898 other upstream 218192 19560074 ~ 19577246 (+) False XLOC_021615
TCONS_00042896 other upstream 576498 19217528 ~ 19218940 (+) True XLOC_021613
TCONS_00042887 other upstream 613050 19177891 ~ 19182388 (+) False XLOC_021608
TCONS_00042879 other upstream 1064039 18731322 ~ 18731399 (+) True XLOC_021602
TCONS_00042875 other upstream 1103956 18688357 ~ 18691482 (+) False XLOC_021600
TCONS_00042917 other downstream 2097 19801136 ~ 19808251 (+) True XLOC_021623
TCONS_00042920 other downstream 14666 19813705 ~ 19821737 (+) False XLOC_021624
TCONS_00042922 other downstream 14680 19813719 ~ 19821463 (+) False XLOC_021624
TCONS_00042927 other downstream 388586 20187625 ~ 20187739 (+) True XLOC_021627
TCONS_00042936 other downstream 649866 20448905 ~ 20470595 (+) True XLOC_021631

Expression Profile

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