RNA id: TU1358994


Basic Information

Item Value
RNA id TU1358994
length 229
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1191340
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58878553 ~ 58878781 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcctaggtgtctcacagtatggacattgtaatttattgccctggccacatctacagtcctcatgtctcttgcagcatgcctaaggcacattcacgcagatgagcagggaccctgggcatctttttttttgtgtttttcagagtcagtagaaaggcctcttttagtgtcctacgttttcataactgtgtcACGGCCGTTAAAAGAACTgtaccaaggtgcagcgtggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358978 lncRNA upstream 22834 58855437 ~ 58855719 (+) True G1191325
TU1358976 lncRNA upstream 26459 58851809 ~ 58852094 (+) True G1191323
TU1358975 lncRNA upstream 26889 58851449 ~ 58851664 (+) True G1191322
TU1358959 lncRNA upstream 77652 58800520 ~ 58800901 (+) True G1191309
TU1358733 lncRNA upstream 170445 58707902 ~ 58708108 (+) True G1191128
TU1359067 lncRNA downstream 181552 59060333 ~ 59060828 (+) True G1191389
TU1359092 lncRNA downstream 239128 59117909 ~ 59118317 (+) True G1191411
TU1359094 lncRNA downstream 249159 59127940 ~ 59128238 (+) True G1191413
TU1359101 lncRNA downstream 261267 59140048 ~ 59180626 (+) False LOC110487024
TU1359102 lncRNA downstream 262855 59141636 ~ 59142132 (+) True G1191419
XM_036941734.1 mRNA upstream 115859 58729691 ~ 58762694 (+) False LOC110518424
XM_036941735.1 mRNA upstream 115859 58729691 ~ 58762694 (+) False LOC110518424
XM_036941736.1 mRNA upstream 115859 58729691 ~ 58762694 (+) False LOC110518424
XM_036941737.1 mRNA upstream 115859 58729691 ~ 58762694 (+) True LOC110518424
XM_036941718.1 mRNA upstream 321487 58521363 ~ 58557066 (+) False LOC110538555
XM_036941740.1 mRNA downstream 261289 59140070 ~ 59251086 (+) False LOC110487024
XM_036941739.1 mRNA downstream 314121 59192902 ~ 59251086 (+) False LOC110487024
XM_021558909.2 mRNA downstream 373515 59252296 ~ 59259759 (+) False LOC110487014
XM_021558910.2 mRNA downstream 373531 59252312 ~ 59259759 (+) True LOC110487014
XM_036941742.1 mRNA downstream 381181 59259962 ~ 59266636 (+) False LOC110487018
TU1358638 other upstream 339834 58536827 ~ 58538719 (+) True LOC110538555
TU1358173 other upstream 837258 58040886 ~ 58041295 (+) True G1190689
TU1358009 other upstream 884572 57965882 ~ 57993981 (+) False G1190568
TU1359148 other downstream 389290 59268071 ~ 59270262 (+) True G1191444
TU1359241 other downstream 507391 59386172 ~ 59388776 (+) True G1191529
TU1359354 other downstream 747054 59625835 ~ 59626661 (+) True G1191622
TU1359499 other downstream 1034317 59913098 ~ 59914246 (+) True LOC110486998
TU1359574 other downstream 1079473 59958254 ~ 59959409 (+) True LOC110486993

Expression Profile