RNA id: TU1363034



Basic Information


Item Value
RNA id TU1363034
length 1288
RNA type TUCP
GC content 0.42
exon number 1
gene id G1194684
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 62935786 ~ 62937073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTACAATGCAATACGATCCTTCTTCCCTTCCTTGAAGTAATCCCTGATTTGACATGACTGATGTAAGCAACCATGCGTGTCAGATCAGTGATTACCTGGAGGATGTATTTAAAGAGTAGTCTAGCAGGGCCAATGTCTGGTCCcgctacagatgatatagctaaTTTGAATTAAATATAACAAAGACAGGAAAACATCAGTTGTCCACTATGTGGGATCATTCAGTAGTATCACAGTACTAGATAGTTGTAAGACATCAACATGAGGGAAAAGCAAGAGATCAACATTGTTTGCGAGGGGAGCGTACTACACGGGCCATTTGAAATGTTCCAATCCCGTCAaattcaactctggacctcgaagccagttccactgcattttctTCATTGTTcgcctcttatcagggactgatttagacctgggacaccaggtttgTGCAATGAATTATCAGGTGGAACAGAAAAGCATCAggtcctcgtagggtcagagttgactACACCTGTTCTAACCCTCTGACtctatgtattttattttatttttttatttatttgttttacctttattttactaggcaagtcagttaagaacaaattatattGGTGACTGTATGGGCTGTACTCTATCATGTCAGTCTACAAGTCTGCAGTCACAAGACGATAAAACCAGCGAGAAAAACTGTGTTTCAGGGAATCCGTTTGACCAAGGCAAAGCACAGAATCAGAATTATTTAGGATGCTATTTAGATCAGTGATTCTGGCAGACTGACTGCAATGTTGTGAAACTCAAACACGCACAACATTATCAAGTGCTGCTCTGATTTCCTGCCTTGGGGCTTTCAAAAAATCTTCCACGGTGCACCCATTGAGTTGCAAAGAGGGCCCACCCCCATTTGCTGTTTTACCAACTGGGACAGCATGGCTAGCGCCATTGAgggctatctccattttaaagtggtACATTTCTGGCATGGATGCCCTCTAGTGTGCCCTCTCCCATCCTATACCCTCTCCTTTAGCCTCTGTCCTGCAATCAACTCGCCCGAAAGACTTCCAATTCTACCATGGACGTACCACATCTGCAACAGTTTACAGTCTGAACCAATTAAGACCAAAGGTTCTGTGACGTGTGAGTTTGTGGTCAACTGTCTCCAAAGCATACAGCCCTATCAGCTGAAGAGGAGCCGCGGATCCAGCTTTAGACACTACAACAGTGATGTAATGTCGgtcaaatagatttttatttttgtCTATAAAAGTGTTGACgataataaaaataaacaatgcCCATA

Function


GO: NA

KEGG:

id description

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1363036 lncRNA downstream 2226 62933343 ~ 62933560 (-) True G1194686
TU1363020 lncRNA downstream 4498 62929952 ~ 62931288 (-) True G1194671
TU1363009 lncRNA downstream 34022 62901363 ~ 62901764 (-) True G1194660
TU1362960 lncRNA downstream 53079 62882495 ~ 62882707 (-) True G1194621
TU1362959 lncRNA downstream 55437 62879730 ~ 62880349 (-) True G1194620
TU1363042 lncRNA upstream 23278 62960351 ~ 62960595 (-) True G1194692
TU1363280 lncRNA upstream 28776 62965849 ~ 62978839 (-) False G1194875
TU1363282 lncRNA upstream 28776 62965849 ~ 62978839 (-) True G1194875
TU1363310 lncRNA upstream 56724 62993797 ~ 62994199 (-) True G1194895
TU1363313 lncRNA upstream 67153 63004226 ~ 63005557 (-) True G1194897
XM_036941853.1 mRNA downstream 8867 62899607 ~ 62926919 (-) False LOC118938348
XM_036941838.1 mRNA downstream 423357 62506293 ~ 62512429 (-) True LOC110487064
XM_036941833.1 mRNA downstream 436596 62495039 ~ 62499190 (-) True LOC118938345
XM_036941835.1 mRNA downstream 461362 62470465 ~ 62474424 (-) False LOC118938346
XM_036941834.1 mRNA downstream 475791 62455727 ~ 62459995 (-) True LOC118936370
XM_021559074.2 mRNA upstream 95 62937168 ~ 62957406 (-) True LOC110487151
XM_036941863.1 mRNA upstream 95339 63032412 ~ 63162700 (-) False LOC110486089
XM_036941856.1 mRNA upstream 95339 63032412 ~ 63218814 (-) False LOC110486089
XM_036941857.1 mRNA upstream 95339 63032412 ~ 63218814 (-) False LOC110486089
XM_036941858.1 mRNA upstream 95339 63032412 ~ 63218814 (-) False LOC110486089
TU1363008 other downstream 8970 62900643 ~ 62926816 (-) True LOC118938348
TU1362829 other downstream 200076 62730954 ~ 62735710 (-) False G1194521
TU1362838 other downstream 200076 62730954 ~ 62735710 (-) False G1194521
TU1362491 other downstream 461824 62469918 ~ 62473962 (-) True LOC118938346
TU1362548 other downstream 475888 62455904 ~ 62459898 (-) False G1194306
TU1363300 other upstream 104933 63042006 ~ 63055361 (-) False LOC110486089
TU1363301 other upstream 104933 63042006 ~ 63055361 (-) False LOC110486089
TU1363302 other upstream 135242 63072315 ~ 63081573 (-) True LOC110486089
TU1363356 other upstream 199967 63137040 ~ 63137722 (-) True G1194933
TU1363571 other upstream 560025 63497098 ~ 63505524 (-) True LOC110485277

Expression Profile


TU1363034 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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TU1363034 Expression in each Bioproject

Bar chart with 10 bars.
TU1363034 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
End of interactive chart.