RNA id: TU1364732


Basic Information

Item Value
RNA id TU1364732
length 711
lncRNA type read_through
GC content 0.45
exon number 2
gene id G1196024
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64627422 ~ 64668426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATCTGAGAATTCATTCAGGGGAGAGGCCTTACCCCTGCCTTGATTGTGGGAAAAGCTTTGCTTTTTTGGGCGCCCTAAACATACACAAGCTAACACACACTGGagtgaagccttatagctgtgatcaatgtgggaagagtttcagtcAGTCTGGCCACCTGACAACACACCAACTAACACACACTGGAGTGAAGCCttttagctgtgatcagtgtgggaagagctttgctctAACTTCCTCCCTGACTAGACACCAGCgtacacacactggagagaaaccttatgtctgtctatgtgggaagagctttgctgtaGCTTCCAATCTGACtacacaccagcgaacacacaccaGAGATAAGCCTTATAGTTGTtatcagtgtggaaagagctttgctTCTTCAGAAACACTAATTATACACCAGCGCATACACACAGCAAAGAAACCTTTTTGCTGtggtcagtgtgggaagagctttgctgtaGCTTTCTCCCTGATtatacaccagcgaacacacactggcGAGAAGCCTTATacctgtgatcagtgtgggaagagcttcagtcAATCAGTACACCTGAAtacacaccagcgaacacacactggagagaaaccttagaTGTGTGGAAAGCTTTGTTCATTTAGGGCCTATGTGGAAAAACACCAGAAAACTGAAAATGTCTTGTATTTAATTTGCCTCCTATCTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1364780 lncRNA downstream 19376 64647751 ~ 64648256 (-) True G1196067
TU1364738 lncRNA downstream 22983 64643161 ~ 64644649 (-) True LOC110510722
TU1364767 lncRNA downstream 45365 64621635 ~ 64622267 (-) True G1196056
TU1364727 lncRNA downstream 51663 64601738 ~ 64615969 (-) False G1196021
TU1364726 lncRNA downstream 51663 64615219 ~ 64615969 (-) True G1196021
TU1364800 lncRNA upstream 39927 64708353 ~ 64728928 (-) True G1196085
TU1364721 lncRNA upstream 82224 64750650 ~ 64771549 (-) True G1196016
TU1364829 lncRNA upstream 114720 64783146 ~ 64785072 (-) True G1196108
TU1364837 lncRNA upstream 124402 64792828 ~ 64793170 (-) False G1196112
TU1364838 lncRNA upstream 124829 64793255 ~ 64793587 (-) True G1196112
XM_036941945.1 mRNA downstream 5591 64641877 ~ 64662041 (-) False LOC110510722
XM_036941941.1 mRNA downstream 12145 64653378 ~ 64655487 (-) True LOC110511879
XM_021591968.2 mRNA downstream 18246 64641877 ~ 64649386 (-) False LOC110510722
XM_021591969.2 mRNA downstream 18246 64641877 ~ 64649386 (-) False LOC110510722
XM_021591971.2 mRNA downstream 22888 64641877 ~ 64644744 (-) False LOC110510722
XM_036941954.1 mRNA upstream 130230 64798656 ~ 64945650 (-) False LOC110487480
XM_036941951.1 mRNA upstream 130230 64798656 ~ 64945651 (-) False LOC110487480
XM_036941952.1 mRNA upstream 130230 64798656 ~ 64945651 (-) False LOC110487480
XM_036941956.1 mRNA upstream 130230 64798656 ~ 64945651 (-) False LOC110487480
XR_005035649.1 mRNA upstream 133746 64802172 ~ 64945651 (-) False LOC110487480
TU1364698 other downstream 190260 64476970 ~ 64477372 (-) True G1195997
TU1364356 other downstream 320225 64334693 ~ 64347407 (-) False LOC110487482
TU1364849 other upstream 126222 64794648 ~ 64795071 (-) True G1196113
TU1364983 other upstream 283364 64951790 ~ 64963785 (-) True G1196205
TU1364987 other upstream 288852 64957278 ~ 64959397 (-) False G1196208
TU1364989 other upstream 288852 64957278 ~ 64960025 (-) False G1196208
TU1364988 other upstream 291062 64959488 ~ 64961176 (-) True G1196208

Expression Profile

TU1364732 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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TU1364732 Expression in each Bioproject

Bar chart with 13 bars.
TU1364732 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00039971 True 761 mRNA 0.42 4 NC_007133.7 2533514 ~ 2538691 (+)