RNA id: TU1364987



Basic Information


Item Value
RNA id TU1364987
length 871
RNA type TUCP
GC content 0.42
exon number 3
gene id G1196208
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64957278 ~ 64961176 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgggttctatcttaacgtactgatgtgtttttacaggttcagtgctgggttctcctatcttaacgtactgatgtgtttttacaggttcagtgctgggttctcctatcttaacgtactgatgtgtttttacaggttcagtgctgggttctcctatcttaacgtactgatgtgtttttacaggttcagtgcttggttctcctatcttaacgtactgatgtgtttttacaggttcagtgctgggttctcctatcttaatgtactgatgtgtttttacaggttcagtgctgggttctcctatcttaacctactgatgtgtttttacaggttcagtgctgggttctcctatcttaacctactgatgtgtttttacaggttcagtgctgggttctcctatcttaacgtactgctgtgtttttacaggttccgtgctgggttctcctatcttaacgtactgatgtgtttttacaggttcagtgctgggttctcctatcttaatgtactgatgtgtttttacaggttcagtgcttggttctcctatcttaacgtactgatgtgtttttacaggttcagtgcttgGTTCTCCTATCTTCACGTACtgctgtgtttttacaggttcagtgctgggttctcctatcttaacgtactgatgtgtttttacaggttcagtgctgggttctcctatcttaacgtactgctgtgtttttacaggttcagtgctgggttctcctatcttaacgtactgatgtgtttttacaggttcagtgctgggttctcctatcttaacatactgatgtgtttttacaggttcagtgctgggttctcctatcttaatgtactgatgtgtttttacaggttcagtgctgggttctcc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1364985 lncRNA downstream 10701 64945835 ~ 64946577 (-) True G1196206
TU1364903 lncRNA downstream 25803 64931175 ~ 64931475 (-) True G1196157
TU1364895 lncRNA downstream 42883 64914019 ~ 64914395 (-) True G1196150
TU1364894 lncRNA downstream 44839 64909661 ~ 64912439 (-) True G1196149
TU1364888 lncRNA downstream 49588 64907290 ~ 64907690 (-) True G1196147
TU1364992 lncRNA upstream 692 64960089 ~ 64961357 (-) True G1196209
TU1364994 lncRNA upstream 7254 64966651 ~ 64966949 (-) True G1196210
TU1365000 lncRNA upstream 8489 64967886 ~ 64968303 (-) True G1196214
TU1364997 lncRNA upstream 10241 64969638 ~ 64970035 (-) False LOC118936529
TU1364998 lncRNA upstream 10356 64969753 ~ 64970035 (-) True LOC118936529
XM_036941958.1 mRNA downstream 3054 64951543 ~ 64954224 (-) False LOC118938356
XM_036941959.1 mRNA downstream 3054 64951543 ~ 64954224 (-) False LOC118938356
XM_036941960.1 mRNA downstream 3054 64951543 ~ 64954224 (-) False LOC118938356
XM_036941961.1 mRNA downstream 3054 64951543 ~ 64954224 (-) False LOC118938356
XM_036941962.1 mRNA downstream 3054 64951543 ~ 64954224 (-) True LOC118938356
XM_036941966.1 mRNA upstream 9779 64969176 ~ 65045461 (-) False LOC118936529
XM_036941965.1 mRNA upstream 9780 64969177 ~ 65045461 (-) False LOC118936529
XM_036941967.1 mRNA upstream 528551 65487948 ~ 65503391 (-) False LOC118938357
XM_036941968.1 mRNA upstream 528551 65487948 ~ 65503392 (-) False LOC118938357
XM_036939784.1 mRNA upstream 1260668 66220065 ~ 66222906 (-) False LOC118938101
TU1364849 other downstream 162207 64794648 ~ 64795071 (-) True G1196113
TU1364698 other downstream 479906 64476970 ~ 64477372 (-) True G1195997
TU1364357 other downstream 609871 64334693 ~ 64347407 (-) False LOC110487482
TU1364988 other upstream 91 64959488 ~ 64961176 (-) True G1196208
TU1365250 other upstream 293882 65253279 ~ 65254078 (-) True G1196409
TU1365418 other upstream 510050 65469447 ~ 65472652 (-) True G1196536
TU1365410 other upstream 532544 65491941 ~ 65503340 (-) False LOC118938357
TU1365411 other upstream 532544 65491941 ~ 65503404 (-) False LOC118938357

Expression Profile


TU1364987 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

TU1364987 Expression in each Bioproject

Bar chart with 19 bars.
TU1364987 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.