Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043129 |
| length | 704 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 3 |
| gene id | XLOC_021737 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 27778670 ~ 27793877 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007507 | heart development | biological_process |
| GO:0003428 | chondrocyte intercalation involved in growth plate cartilage morphogenesis | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0060026 | convergent extension | biological_process |
| GO:0060027 | convergent extension involved in gastrulation | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0048701 | embryonic cranial skeleton morphogenesis | biological_process |
| GO:0048703 | embryonic viscerocranium morphogenesis | biological_process |
| GO:0044666 | MLL3/4 complex | cellular_component |
| GO:0035097 | histone methyltransferase complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0042800 | histone methyltransferase activity (H3-K4 specific) | molecular_function |
| GO:0003713 | transcription coactivator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060223-2 | Predicted to enable histone binding activity; histone methyltransferase activity (H3-K4 specific); and transcription coactivator activity. Acts upstream of or within animal organ development and convergent extension involved in gastrulation. Predicted to be located in nucleus. Predicted to be part of MLL3/4 complex. Used to study Kabuki syndrome. Human ortholog(s) of this gene implicated in Kabuki syndrome and esophagus squamous cell carcinoma. Orthologous to human KMT2D (lysine methyltransferase 2D). |
| ensembl_id | ENSDART00000134785 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043124 | lncRNA | upstream | 60289 | 27703754 ~ 27719163 (+) | True | XLOC_021734 |
| TCONS_00044833 | lncRNA | upstream | 263179 | 27508870 ~ 27516273 (+) | True | XLOC_021731 |
| TCONS_00044832 | lncRNA | upstream | 267350 | 27508867 ~ 27512102 (+) | False | XLOC_021731 |
| TCONS_00044831 | lncRNA | upstream | 1180041 | 26591692 ~ 26599411 (+) | True | XLOC_021722 |
| TCONS_00044830 | lncRNA | upstream | 1183505 | 26591613 ~ 26595947 (+) | False | XLOC_021722 |
| TCONS_00044834 | lncRNA | downstream | 90215 | 27870739 ~ 27872705 (+) | True | XLOC_021738 |
| TCONS_00044835 | lncRNA | downstream | 359235 | 28139759 ~ 28160364 (+) | False | XLOC_021742 |
| TCONS_00044836 | lncRNA | downstream | 359235 | 28139759 ~ 28277430 (+) | False | XLOC_021742 |
| TCONS_00044675 | lncRNA | downstream | 359271 | 28139795 ~ 28160364 (+) | False | XLOC_021742 |
| TCONS_00043139 | lncRNA | downstream | 359302 | 28139826 ~ 28249645 (+) | False | XLOC_021742 |
| TCONS_00043127 | mRNA | upstream | 10459 | 27756984 ~ 27768993 (+) | True | XLOC_021736 |
| TCONS_00043126 | mRNA | upstream | 30390 | 27740788 ~ 27749062 (+) | True | XLOC_021735 |
| TCONS_00043125 | mRNA | upstream | 38163 | 27740592 ~ 27741289 (+) | False | XLOC_021735 |
| TCONS_00043123 | mRNA | upstream | 51940 | 27703749 ~ 27727512 (+) | False | XLOC_021734 |
| TCONS_00043122 | mRNA | upstream | 101936 | 27675581 ~ 27677516 (+) | True | XLOC_021733 |
| TCONS_00043130 | mRNA | downstream | 1547 | 27782071 ~ 27784063 (+) | False | XLOC_021737 |
| TCONS_00043131 | mRNA | downstream | 9271 | 27789795 ~ 27793877 (+) | True | XLOC_021737 |
| TCONS_00043132 | mRNA | downstream | 131555 | 27912079 ~ 28007307 (+) | True | XLOC_021739 |
| TCONS_00043133 | mRNA | downstream | 297429 | 28077953 ~ 28090885 (+) | False | XLOC_021740 |
| TCONS_00043134 | mRNA | downstream | 297429 | 28077953 ~ 28091109 (+) | True | XLOC_021740 |
| TCONS_00043115 | other | upstream | 775471 | 26979174 ~ 27003981 (+) | False | XLOC_021726 |
| TCONS_00043112 | other | upstream | 850594 | 26928743 ~ 26928858 (+) | True | XLOC_021724 |
| TCONS_00043098 | other | upstream | 1784311 | 25995027 ~ 25995141 (+) | True | XLOC_021714 |
| TCONS_00043095 | other | upstream | 1882443 | 25879768 ~ 25897009 (+) | False | XLOC_021712 |
| TCONS_00043091 | other | upstream | 1917155 | 25861398 ~ 25862297 (+) | True | XLOC_021710 |
| TCONS_00043140 | other | downstream | 359793 | 28140317 ~ 28148953 (+) | True | XLOC_021742 |
| TCONS_00043142 | other | downstream | 542556 | 28323080 ~ 28325841 (+) | False | XLOC_021743 |
| TCONS_00043158 | other | downstream | 755837 | 28536361 ~ 28536457 (+) | True | XLOC_021747 |
| TCONS_00043159 | other | downstream | 756141 | 28536665 ~ 28536778 (+) | True | XLOC_021748 |
| TCONS_00043161 | other | downstream | 834303 | 28614827 ~ 28614942 (+) | True | XLOC_021750 |
