RNA id: XM_036942769.1


Basic Information

Item Value
RNA id XM_036942769.1
length 3667
RNA type mRNA
GC content 0.55
exon number 12
gene id LOC110488658
representative False

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 7175176 ~ 7228229 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCGACCCGTGCTGGTGATAAATATAAAATTGTGCCTTCAAGTTGCTGAACCTGCCCTGACGTGATATATATTGTTTATTATCTCAGATGCAGTATTTTGTCGCTATAGCTAAATATTAACTCTAACTTATGCTGCTCACGATTTCTCCCGATGTCTGACGAAGGAAGCGACAGCGCCGAGCTAGCAGAGCTCCGgtgctctccctccccatctccaccCGGGCTCCCCGgaaccccctctcctccactgccGCCAGACTTCTCCTCCAGTCCCCCGGTGCTTCGAGACCCAGCCCCGTTACCCCAGGACTGCCTCCGCCCGTCTCCAGAGCGCTGCAAACCCGGGGACTCCCCGCGCTGTACCCTGCCAAAGTTAACCCAGCGACTGACGAAGACGGGCTCTCAGTTCCGCCAGAGACAGAATGCGCGCTTAACAGCTGCGGCGGACAACGGGCGCGATGCCCTCTCTCCAAAGCGCAGAGACGGAGACACCACCTCGGCAACGTTTCAGGACCTTGGACAGCAACTCCCCCGCGGACAGGACCGAGAGTATTACCACTGCACTAATCAGCTCCTAGAGCCCCAGCGAGACAGCAGTGAGACCCAGCCACCAGTGGAAGCAATGCAGCGGAGACACACCACGCTGAGGGAGAAGGGGCGTCGCCAGGCTGTGCGAGGCCCAGCCTACATGTTTAACGAGCGTGGCTCGGCCCTGACGCCGGAGGAAGAGGGTTTCCTTGACGCTGCCGAGTACGGCAACATCCCCGTGGTCcgtaagatgctggaggagtccAAGACCCTCAACTTCAACTGTGTGGACTACATGGGCCAGAATGCATTGCAGCTGGCGGTGGGCAATGAACACCTGGAAGTGACTGAGCTGTTGCTAAAGATGGATGGGCTAGCCAGAGTGGGCGACGGGCTCTTATTGGCTATCTCTAAAGGGTATGTGCGTATCGTGGAAGCCATATTGGCGAACCCGGCGTTCAGCCAAGGGCTGCGGCTCACCCAGAGTCCCCTCGAACAGGAGCTACGGGATGATGATTTTTACGCTTACGATGAAGACGGGACACGCTTTTCCCACGACGTCACCCCAGTCATCCTAGCAGCACACTGTCAGGAGTATGAGATTGTGCATATTCTGCTCACCAAGGGGGCCCGCATCGAGAGGCCTCATGACTACTTCTGTAAGTGCAATGAGTGTGTAGAGAAGCAGAAGAGAGACTCGTTCAGCCACTCCCGCTCCAGGATGAATGCTTATAAAGGGCTGGCCAGTGCTGCCTACCTGTCCCTGAGCAGTGAAGACCCTGTCCTCACCGCCCTGGAGCTCAGCAACGAACTGGCCAGACTGGCTAACATAGAGACTGAGTTTAAGaaTGACTACAGGAAGTTGTCCATGCAGTGTAAGGACTTTGTAGTGGGGGTGTTGGACCAgtgcagagacacagaggaggtgGAGGCCATCTTGAACGGAGACGTGGACAATGCCCCGCCCAGTGACAACAACCGCCCCTGCCTCGAACGCGTCAAATTGGCCATCAAATACGAGGTCAAGAAGtTTGTGGCGCACCCTAACTGCCAGCAGCAGCTGCTGACTATCTGGTATGAGAACCTGTCAGGTCTGAGGCAGCAGTCCATCGGGGTCAAGTGTTGGACTGTGCTAGGGGTCACCGTGGGACTGCCCTTCCTGGCTATTGCCTACTGGATCATGCCCTGCAGCAAGCTGGGTCAGATCCTGAGAAGTCCCTTCATGAAGTTTGTGGCTCACGCAGTGTCCTTCACCCTCTTCCTGGGCCTGCTGGTCATCAACGCCTCGGACCGCTTCGAGGGGGTCAGGAACCTGCCCAACGAGACCATCACTGACCACCCTCGCCAGGTGTTCCGGGTCAAGACCACTCAGTTCTCATGGACCGAGATGCTCATCATGAAATGCGTGCTGGgtaTGATCTGGTCGGAGGTCAAGGAGATCTGGGTGGACGGTCCTAGAGAGTATGTGATGCACTTGTGGAATGTGTTAGACTTCGGCATGTTGTCTATCTTTGTGGCTTCGTTCACCGCTCGGTTCATGGCCTTCCTCAAGGCCTCGAAGGCCCAGCTGTACGTCGACCAGTTTGTCACCGACGAAGACATCCGCAACGCATCACTACCTACAGAGGTAGCCTACTACACCTATGCCAGGAATAAGTGGCGTCCATCGGACCCCCAGATCATCTCAGAAGGTCTGTATGCCATTGCTGTGGTGCTGAGTTTCTCCCGCATCGCCTACATcctgccagccaacgagagcttcGGCCCCCTCCAGATCTCCCTGGGCCGGACGGTGAAGGACATCTTCAAGTTCATGGTCATCTTCATTATGGTGTTTGTGGCCTTCATGATCGGCATGTTCAACCTCTACTCTTATTACCTAGGAGCCAAGTACAACCCTGCCTTCACCACGGTGGAGGAGAGCTTTAAGACTCTGTTCTGGTCCATCTTTGGTCTGTCGGAGGTGATCTCCGTGGTCCTGAAGTATGACCATAAGTTCATAGAGAATATTGGCTATGTGCTGTTTGGGGTCTATAACGTCACTATGGTGGTGGTTCTACTCAACATGCTCATCGCTATGATCAATAGCTCCTACCAAGAGATAGAGACAGATGCAGATGTAGAGTGGAAGTTTGCCCGTGCCAAGCTGTGGATGTCCTACTTTGACGAGGGTCGCACTCTGCCCGCTCCTTTCAACATGGTGCCTTCTCCCAAATCCTGGTACTACCTGGTCCTCCGCACCAAAGCCTGCATCGTTCACCTCTGCAAGGCCAAGGGGCGTCGCCACGACAACGAGCTAGAGATGGGCATGCTTAACCCACGACTCAAGGGCAAACGCTACAGAGCCCACGGTCGACCACGAGAGGAGTCCACTCTCAGAAAACCCATCAAACATCCCACCAGATACCAGAAGATCATGAAGCGTCTCATTAAGCGCTATGTTCTGAAAGCTCAGGTTGACAGGGAGAACGATGAAGTCAATGAAGGGGAACTGAAGGAGATCAAGCAGGACATCTCCAGCCTGCGCTATGAGCTCCTGGAGGAGAAGTCTCAGGCCACCGGAGAACTGGCTGACCTCATCACACAACTCAGTGACACATTTGTCAAGAACGCCACCAAAAAAAAcctaagagagaggggagaaggggtagGAGAGAGGCGTGGGGGAGGCATGAAaatagagggagagtgagaggtggggggaaagaggggagaagagaaagggggaggggaagagaactGGTGGACAGATAGAGAAttacagagaaagagcgagagggtgatggagagagtgGATGAAAAGGTGGTCAGGAATGAGAGTTGAAAGAGTGGCTTTCTGGGGAGTAGATGCCCTGATCTAAttagtggagggaggagagtgagataggacaggaggagaagagagaaagggaggagatcAGTGGgacggagggagaagagaggaggcaggagagaggaatagtgacagagggaggaggcTCTGAACAGCGCGAGGGGAATATAGGGGATTGTTTAGAGTAGAATTCCGAGGCAGCAACGAAAGACGACCCACACAGCCAAACTACATCAGctcaacgagagagagagagagagaaacagagagagagagagagagaaacacagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1381772 lncRNA upstream 87713 7086660 ~ 7087463 (+) True LOC118938692
TU1381776 lncRNA upstream 93289 7046736 ~ 7081887 (+) True LOC110488657
TU1381848 lncRNA upstream 141358 7012757 ~ 7033818 (+) True G1210049
TU1381847 lncRNA upstream 159778 7000733 ~ 7015398 (+) False G1210049
TU1382172 lncRNA downstream 17306 7245062 ~ 7245273 (+) True G1210338
TU1382370 lncRNA downstream 188003 7415759 ~ 7417025 (+) True G1210496
TU1382371 lncRNA downstream 189322 7417078 ~ 7417464 (+) True G1210497
TU1382375 lncRNA downstream 196812 7424568 ~ 7424923 (+) True G1210501
TU1382395 lncRNA downstream 228155 7455911 ~ 7459023 (+) False LOC118938693
XM_036942768.1 mRNA upstream 88460 7083183 ~ 7086716 (+) False LOC118938692
XM_036942766.1 mRNA upstream 93183 6940410 ~ 7081993 (+) False LOC110488657
XM_036942765.1 mRNA upstream 93183 6941117 ~ 7081993 (+) False LOC110488657
NM_001165140.1 mRNA upstream 237266 6933060 ~ 6937910 (+) True dock2
XM_036942763.1 mRNA upstream 288651 6845220 ~ 6886525 (+) False LOC110488650
XM_036942770.1 mRNA downstream 20023 7247779 ~ 7249658 (+) True LOC110488659
XM_036942774.1 mRNA downstream 23609 7251365 ~ 7385487 (+) False LOC110488661
XM_036942772.1 mRNA downstream 23610 7251366 ~ 7385487 (+) False LOC110488661
XM_036942775.1 mRNA downstream 23610 7251366 ~ 7385487 (+) False LOC110488661
XM_036942771.1 mRNA downstream 23611 7251367 ~ 7385487 (+) False LOC110488661
TU1381317 other upstream 418365 6753137 ~ 6756811 (+) False G1209572
TU1381321 other upstream 418461 6753137 ~ 6756715 (+) True G1209572
TU1381318 other upstream 418835 6752957 ~ 6756341 (+) False G1209572
TU1381375 other upstream 423462 6751352 ~ 6751714 (+) True G1209622
TU1381366 other upstream 430386 6743934 ~ 6744790 (+) True G1209615
TU1382289 other downstream 91264 7319020 ~ 7321287 (+) True LOC110488661
TU1382376 other downstream 204621 7432377 ~ 7435168 (+) True G1210502
TU1382403 other downstream 232092 7459848 ~ 7481225 (+) False G1210520
TU1382615 other downstream 583375 7811131 ~ 7811872 (+) True G1210695
TU1382628 other downstream 601067 7828823 ~ 7836843 (+) True G1210708

Expression Profile