RNA id: TCONS_00043171


Basic Information

Item Value
RNA id TCONS_00043171
length 4937
RNA type mRNA
GC content 0.40
exon number 10
gene id XLOC_021757
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28809002 ~ 28925757 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTGGCTAACAGCGCTGAAGAGATGGCATCCCAGGACCAACCTGACCCGCAAAATCAGaaTGCTCCTTCAGCCAGGGAAGACGCGGCTCCGAGAGAAGCGCTGATTACAGCTTTAACAAGCCAATCAGGAATCAGTCAAGTGAGCTGCGATGTGACATATACAAGTTCATATAGAGGGAACGAGCTCTGTATATGTACACTATGCTGTGCAAAGCAGatcgCTACGGCAATGAGGTTTCTACAAAACCAGCAAGTTCGTCAAAGCCCCCTGGCAACCAGAAAAGCTTTCTTGAAGAAAAAAGGTCTTACTGATGAGGAGGTTGATCTGGCCATCCAGCGGTCTGGTAATACGGACGAGCCACTAGCTCTTGCAGTTCCGGGACCCATGCACTTTGCTCACCCTGTTCCTCTGGCCCCGCACAgTCCCTCAGGTTACAGATGGAGAGACTACAGTGCCCTGGCTGTCATCCTGGCAGGAATAGCCTTTGGCTTCCATCATCTCTACCGgAAATACATCCTTCCCCTCATTATGGGCAGCAAAGAGGACAAGAAGCATCTGCAGCGGATCGAGAGCAACATCGCGGATATGAGTGGCACGCTGACACAGACAGTCACCCAGCTGCAGATGACCCTGGCTTCGGTGCAGGAGCTGCTGGTCCAACAACAGAAGAAAATACAGGAGCTGACACAAGAGCTGGCTAACTCACagGCTTCATCTGCCACCAACCGCATGCTGGAGTCTCAGAGCATCAGTGAACTCAAGGCTGAGATTGTGTCTCTTAAGGGTCTTCTCCTCAGCAGGAGACAGTTCCCTGCTTCACCATCCGTTCCAAAAATCCCATCCTGGCAGATACCTCTCAAACCGGGGTCGCTGTCCAACCCGCCCTCCGTCAACCACACCAACAGCAGCAGCGACATTTCACCTGTTAGCAACGAGTCAGCTAATTCCTCTCCCATAAAAGAGTGCAGCAGCTCTCAGGCCACCCCGTCCGGCTCACACTGTCTGAACGGAGATGTGGGCCTGGGCTCCCTTCACCCTCTAGACCTGAAAGACCAGGTCCGTATGGAAGTCCAAGGAGAGGAGGAGAAGAAAGCGGATGATGAGGAAGAGGAAGatgaggaggatgatgatgacgTAACCCACGTGGATGAGGAAGATCATTTGAACGTGCAGACGGAGGACAGGAGAGGAGGCGATGGACAAATAAATGAGCAAGTGGAGAAACTACGACGTCCAGAGGGTGCGAGTAATGAGAGCGAAGTTGATTAGAGCTAAAAAATTCCCACACCCGGACTTCATCCGTCCATCTGCTCCTCTTGGTTTTCCCAGGTTTCCTTAGAGTTCATTTAAGTTTTGAAATCACACCCTCGTTGTTGTAAAACGGCTACCGTGAGCATCATTTAGCACTGTACAAGAGCTGCAGGTGAGGTGGATTATGTTCTTTTCACTGCAGTTCTTTACCCTTTTGACTTTTCCACGTGCAAACTTTCAACGTGCAAACCAGGGTGACGGCACAAACCTTCTGCATGCCTGAACAAGCACAGCAACAGACATTTTTGGAAAGACCATGAGagaattatgacttttttttgtttgtttgtgtgtgttttgcaatCAGTCAGAGTCCATACGGTTTCCTTTAATGCTAGCTATTTTACTGAAGACTGTAGTGGTTTAAAAATGTCTGTGTAAAGTGTTGGCTTACCTAAAAGTGAAAATTCTGACggcatttactcatcctcatgaaATTCTAAATccataaagtttatttttttgtcttaaaaaactgtattttggTGGAATTTAATTGGAAGCATATCAATTTCTCAGATTTCATTTAAAGTTTGTACATCTAAAACTCTGACAAgtcaaaacaataataaagagATTGTATCTACTTGAATCTAGCAGTTCAATCCAAGTCTTCTGAAGGTACATGACAACTTTGATAAACAGTTTTAATTTGGgcttttatttgcatattaacaTTGATCAGTGAACATAATCAGAAGCTTAGGCATGAAAAAAGTTAATTCCTAAAAAACTTCAAACATGCTAGAGTGACAAAATAATGGACATTATTGGTCTTTGTGGAAGCTCAAACATGCCACTTGACATCCAAGGTTGAACTTCATTGTTTCTCGCAGAACTTTTGCAGTTTTGGAGTCTTGTTTTTAGCCCAAATACCTAAAACTTCTTTAATGAAGAAACATTTTCTGGACAAGTGAAGAAAATGATCATTTACGttattatagatttattatttattggttttcagaaataataaatcaaaattaaatgtgtttttccttaaaacaagcaaaataatctgtgagtggtgcaagtaaaaatctttttttttttttttttggaaaatagcTTAGAAGTACTTGTCTAtaaaatgcatcttgatttaaaaagaaaaacaagagaaAAGCTCAAAGAAAGGAAGTGTGCCACATGATACCCATGAATGTACCTCATTGGTTCTTGCAGAATCTCTAATGTACATGTGGCATTCAAGAAAGGACCTCATTGGTTTTTTTAGGAAGCTGGCGTGACAAGAATTATCTTTTTTGTGCACACCAGGCAAACATGTTTAAACTTCCATAATTAAATATAAGTGCTACAAATATTGCTTACTTATTAtggtttttatgtatataaaaacacaaatctgtTTATCATGATTAGCAATCATGTCTTTTAGAAGACTTGAATTAAACTGCTCAATTCATTTGGATTTACATTTTTCCTTATAAATATTTGAAGCATCAACATTTTGACTGAAACAGCTGTCAGTCACagctgtcagagagagagagaaaaaagtctGTCACTGATTTGATTCCGCATTGGGCCTGAGGGTCAGTAAATGAcgaccagatttttttttaaatcatttgggGAGCACCAACCCTTTAAGTGTACTCCAGCATTTCAAGTCAATTTAAACCTAATAAATTGCAATGTAGGCACTATAGCAACAAATCTGTGGCACCAAAGAATCAGAAAGTTGTTATCTGAGATTGTTTCTGTGCCATTCAGCAGTAAAGACTAGTGGACAGTTATTAACCTGTTGGATGTGAATGTTCATTATGATAGCGTGAACTCTCCTTCAGATGTTTGAGATTATGTATAGTAGTACACTGGGCTGTAGCAGTCGGGCTGTGCCTTGTGACCGGTGGATTTAagatgagaaagaaagaaagaaagaaagaaagggggAGGGAAAACATGCATGAGAACAGACAATGATGCGAAAGAGAAATGTGTTTGTCTCGTTTGTATCTCTGAGTCTCCAGCAGGGTAGCTGATTTGGTTTATGAAGTATGTTAATAATCAAATGATCGACAAATAACAGATGTATTAGTTCATGCGGCTTGAAATGTCAAGGAGGCTAAAATCGGAAATCTAATACTGAAAGCctgttatattgtattatattacatgACAAACCCTCCAGTCCAAATTATATAGGCCTCCTGCAGTGAATAATCTTAACATGAAACGGTGCTGGGGTTTTGTAATTAAACTGTGTAAAACAATGGATGCTTCAGCAGAGGTGCTGACAGTTCTGCTTTTTTCTTTGGGGGCTTTTCTCTCAGAAAGTCCTaaaggatgaaaaaaaaatttccccCGTGATGCAAATGGAGAGTAACGTATGAATATTTAAGTAATGAAATTACTCACTCGCCAGCTGATGAGAAACAAAGCCAGAGAGATCCTGGAGTGAGAACGAGAACGTCGGATCCATTGTGACATTTTCACTTTTAACAAATGACCTTCAGAGTAACCGGATTACAGCGCAGCCAGGTGAATTGTGGCTCTTGTGGCACAACGAAAGAGCCCAACTTTTctggccgtgtgtgtgtgtgtttcttcttAGACTAGGGTTGGCTTAACACTTACCCCACACGAGAATAACATATATTAATATGTTATAGTGTCATAGAAACTGTGTTTTGTTATGCAGTAACTTTTATTTCTGAAGCCAAGGCTTAAACTCCAAATGCAAAGAGAATATTAGAGTAGCTCATCCGAAGAGGAGGAAAAAAAGGCAATTATTCACTCTTGTCATATGACACAAATCACACAGTTATGCATTTCTTATTAATTGAACGCAATAATTTTTAAACGAATtataaactaaataatttaagAACACTTGAAAAGTTTTTTGTAAAGGATTTATTCAAACTGAGCCATAAAGCTTACAGTTTATGGTTTTTGCTGTCATAATTTGCTGTCAACTTTTTTCCCCATCTGTTCTCCAAAGAAGAAACACTCTGTAAAAATATGGGAGTgatgctttttttcccctttttgacTTTATCGTCGCATCATATAGCTGTCAGAAGTGTCATCAGAGTTACCGATTTTTAGCTATTTAAGGGAAAGGAAGAGCATCAGCGTGAGACCGCTttagtgagcgtgtgtgtgtgtgtttatgtcagTTTTGCTTAACCACATACAGGAGCTCCTGCAACTAGCAGGTTGTTTCTGGTAGCGTGGTGACAGAGGCcttcaaatagaatagtttgctAATTTGAGCTAATCGTGAATTCGCTGTGAGGGCTACTGAATTAATCATGACATAAGCCACAGATTCAGTGCCTGTATCTCCTTAAAGATTACATTCTCCTCTCCTGCTGTGTTTTTATGGCAGTTTTGGTTGGAATCGACATCATTTTGCTCAGTTCAGCAAATCAGATTAGGGATTTATTCACTGGTTCTCATTTACTGTatgtgagctgagagtgtgtCGGATTGGTTTTATAAGTAAGTTTTCGTCAGAAGCCTGGAACAGTACAAACTGCACAGTGTTGCTGGATGTTGAAGTTGTTGTTGACACCCTGTTGATATATATGTGTCACAGAGATGGTGTGAAAAGATGAATGTacataattgtaataaatatctGATTTAACACaaa

Function

GO:

id name namespace
GO:0016560 protein import into peroxisome matrix, docking biological_process
GO:0015031 protein transport biological_process
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:1990429 peroxisomal importomer complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04146 Peroxisome
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-060130-169 Predicted to enable signaling receptor binding activity. Predicted to be involved in protein import into peroxisome matrix, docking. Predicted to act upstream of or within protein transport. Predicted to be located in membrane and peroxisome. Predicted to be integral component of membrane. Predicted to be part of peroxisomal importomer complex. Predicted to be active in peroxisomal membrane. Is expressed in head. Human ortholog(s) of this gene implicated in peroxisome biogenesis disorder 13A. Orthologous to human PEX14 (peroxisomal biogenesis factor 14).

Ensembl:

ensembl_id ENSDART00000134121

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043168 lncRNA upstream 35886 28770322 ~ 28773116 (+) True XLOC_021754
TCONS_00044840 lncRNA upstream 388418 28390713 ~ 28420584 (+) False XLOC_021745
TCONS_00043175 lncRNA downstream 18557 28944314 ~ 28960309 (+) False XLOC_021761
TCONS_00044843 lncRNA downstream 18691 28944448 ~ 28960309 (+) False XLOC_021761
TCONS_00044844 lncRNA downstream 27748 28953505 ~ 28960309 (+) True XLOC_021761
TCONS_00044845 lncRNA downstream 432909 29358666 ~ 29360865 (+) True XLOC_021762
TCONS_00044846 lncRNA downstream 470424 29396181 ~ 29402096 (+) True XLOC_021763
TCONS_00043166 mRNA upstream 12845 28770225 ~ 28796157 (+) False XLOC_021754
TCONS_00043167 mRNA upstream 16113 28770301 ~ 28792889 (+) False XLOC_021754
TCONS_00043165 mRNA upstream 76689 28731379 ~ 28732313 (+) True XLOC_021753
TCONS_00043164 mRNA upstream 81896 28718863 ~ 28727106 (+) True XLOC_021752
TCONS_00043163 mRNA upstream 95020 28693278 ~ 28713982 (+) True XLOC_021751
TCONS_00043176 mRNA downstream 432033 29357790 ~ 29360865 (+) False XLOC_021762
TCONS_00043177 mRNA downstream 432033 29357790 ~ 29361618 (+) False XLOC_021762
TCONS_00043180 mRNA downstream 432431 29358188 ~ 29361169 (+) False XLOC_021762
TCONS_00043181 mRNA downstream 644136 29569893 ~ 29574744 (+) False XLOC_021764
TCONS_00043182 mRNA downstream 644629 29570386 ~ 29575691 (+) False XLOC_021764
TCONS_00043170 other upstream 8783 28800103 ~ 28800219 (+) True XLOC_021756
TCONS_00043169 other upstream 11454 28797426 ~ 28797548 (+) True XLOC_021755
TCONS_00043161 other upstream 194060 28614827 ~ 28614942 (+) True XLOC_021750
TCONS_00043159 other upstream 272224 28536665 ~ 28536778 (+) True XLOC_021748
TCONS_00043158 other upstream 272545 28536361 ~ 28536457 (+) True XLOC_021747
TCONS_00043174 other downstream 166 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043178 other downstream 432033 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other downstream 432195 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043184 other downstream 662687 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043209 other downstream 2053628 30979385 ~ 30979499 (+) True XLOC_021782

Expression Profile

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