RNA id: TCONS_00044844


Basic Information

Item Value
RNA id TCONS_00044844
length 6805
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id XLOC_021761
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28944314 ~ 28960309 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCGTGTGCGTGAATGGAAATGGCAAAATGAATGTGAATGCCAAAGGTTACGAGGAAATGGATGAGATTTACAGACACAAACTAAAAACAGAGCAATGGCGCAATTACGTGTACAAATGGAATGATTCTGTGTTTATGACGAGCGTATGAGATGTGATTTGTTAGCAAACAACTGTACACTTCTCAGCTGTCAGAAACACACAGTTGTTGTAATTTGTTTGGGGGTGTAATGCAATTAAACGATGCAATAAGGAAGGGAAATCTACACATGGCTTTGGTCTGAACTAGAGGGCTTGAAgctttctgattggctgtcgTGCATTCTAATAGGTTGTGTGGATGATGTGTGAGCGGCGCTGCTGAGACATATGTACTGAACACCTGTCGTGTGTTTAAGGGCCTCATTGTTGCTCATGCACCACTGCTGTGTTTCATGCAACCTGTtcctggaacacacacacacacacacacgcgcgtcTTATATAGAGGAGATTGTGTGTATGTTTCATGTGAAATCTGTCAGTTGAATGAGatcagtgtaaaaaaaacaaacacttaattTGTTTATAGTGTAGGGTGGCACTTTGGCTCattgattagcactgttgccttacagcaagaaggtcactggttcaagtccagctggcgtttctgtgtggagtttgcatgttctccccgtgttggtgtgggtttcctctgggtgctccggtttcccccacagtccaaagacataagtgTGTATGtttgaattagtgtgtatgggtgtttcccagtactcggttgtggctggaaggacatctgctgcgtaaaacgtgagggaatagttggtggttcattccactgtggcggcctTTGCAATAAAGATTAAGtcgcaggaaaatgaatgaatgaatgtttatagtGTAGTTGTACATTACAACTATTGAATGACTTGAAGTACAGACTTGGGATTATCGTTATTGAATATAATAATGCATAATTTAATGTTGTTACTGCATTAAGAACATGTAATCTTGCCAGTAAATGTCACAGTttcagactttttttatttttatttcaagaaaATGTGATCCTGGGCcacaaaacatattttacagattatcataaataaataattgagatTTACACATCCTCTGAATGCTGAATAATTAAGCTTTCCATTcatgaaattaaacaaaatgaaacttGTAAACAATTTGaagggcgcagtgggtagcacaatctcttcacagcaagaaggtcgctggttcaagccctggctaggtcagttggtatttctgtatggcgtttgcatgttctcctactgtatatgttcgcatgggtttcccccacagtccaaagacatggggtttAGGTGAacttaataagctaaattggccatagtgtgtgtgtgagagagtgtgtatgaatgtttctcattactgggttgcagctggtagggcatctgctgcgtaaaacgtgctggatatgttggtggttcattccgctgtggcgaccccaaaaagtaactaagctgaaaagaaaatgatattTGAGTTTAGCTATtttataattgaacatttttaacATATCTTTATGCAACATGTTCTTTACTtaacatttgaatggtttcttggcataaaagaaaaatctatcattttgacccatacataTTTTAGGTTTttgcatataaataaacatgcaactaaaggctggttttgtggtccaggaccACTAATGTaattctatatatttattatttatagatttttttttttacctcgttcttaattcatttatctatttgtctgtctgtccatctacagtttttaatgtatattttttctttataccTATGCTAGATTCCTTCTAGTTTCATCCTTTTTGAGTTTTGACATGttcatgcatttttaatataGTCTAAGAGTCCGAATACTTCTTGGAATGGTGTTTGCAGCATAATTTACATAATCATattcaatttataatttatacaacaaaattagatttcttttttcttcccTTAAAAATTCTGACAATAAGGTGATCTGTTGTTTCAACAGCAGCCTGCGCAAGTTTGGAGGTTGTTTCCGTCTGTTTTTTTGTGTAATATAATTTCCatagttgtctttttttttcaagattataTTCAGGATGCCAGCTGGCAGACAGATGGTGGTGGCTTTACACGTTTTTATTTAAAGACACATCAGAAGGAAGAGGAGGGTGAGGCAAGAGAACAGCTGTAGTGAGTGGGACAGGACGGCATTTGCTGGTCAAAGCGATGAGCTGCACAAGgaaagaaaagaatgaaaaacAAGCCTTGCAGAGAACTACAAACTTTCTCCAAATGTGTTTGTTCCCTAAATACAGCTCAATgatagagagaagatttttgaGGTGTTgtttttcacccaaaaatgaaaaccctCAAGAGGTTATATactgttttgaagaaagctgaaagcctataaccattgacttctatagtaggaaaaaaacaactactctagaagttttcaacattcttcagaatatcttcttttgtgttcaacagaagaaagaaactcaaactggtttggaacaactgagagtaattaatgacagaattttaaattttgcgtgaactatccttttaaagcaGTGTCTTCCTGAGTGAGAGAGTAGCGGGACGTCCTCTGTTGGGGCCCAGTGCCCTTTAACACCATTCATCAAAGCGGGAGAAAGCTTTATTAATCACTGATGATATGGAGAAACATCTTGTGGAACATTTGCATTGTTATAATAATTAGAATTTCTTTATTTCGACTCTTTACAAATCCTGCTATTTTACACACATAAAATGTATTCAAGTGCACAGTATCTCCCAGGCAAAAACAGCTGCTTCAGTGTGAGTCCTGCGCTTTGCACTTGAGACCAGAGAACAAACGGCCTGTGAGAGGGGCATGCCATATGCAAAATACAGAagttcaattaaataaaacaaacaccaaAACAATAGCAAACAAAGAGTTGTGGATGGTTTGAAATTATGCAGATATTGTGATCGCACATGATATACAGCTTCGAAAACGATGACTTCCTTGCGCAAAACGTAGAAAAACACTCCACTGTTCAGTGCTACAATAATGTGACTCGTATAGATTTAATTACCACTAATTCCTCTACCACTATGGGGAAACCAtggtaataacaataaaacttcacacacacacagacagacagacacgcgCACGCTTGCAtacatctctcacacacacacacacatacaagcaaaCTATACTGGTGTTAGatcagtttttaactttttattcttTTAGTTGTccgtttttattttctttttaaaggaaGCTTTGAATCAAAGAGCATTTTTGTTCATATATAGTTTTTACAGAAGAAAATACTATACAGCCTTTTTTCCCTCCTGAAACAGATAACCATCCACACATTTAGTTGCCTATATTGTGATAGTTCCTTGTTTAGGAAACAATTCATCACCTCATTTTTCCTATATTCAGTGGAGGCCAAGCAAACAAAactcatttttctttctttttgtttgtaatttggAGCGAAGCACTGCAATAATTTCCTCTGTATAGAATTCATTTAAATTACAGTCATCATTAGTGTTACTCATTAGGCAAGCCAGGTTCTAGCATGCCTGTTTCATATTGAAATCATCCAATCTTGGTAgcgaagaaaacatttttttttccatttttttttttttttagtttcttaaATAAAACACAGAACAACAGTTCTTCATCACACTGAAGACTATTTGTGCATCAAAGCAAAAGTGAACTAAACAACATTGTAAAGCAAATTCCCTGTTAAAAGATATATGCCATATTTTCAAAAGGTAAAAATGAACCTAAAAAGTGCAAAAAACACCCTAGAATTTTCTCATTGCAAGGtcacataaatattaaataacttctTATTACTGGAGCAAAACCACAGCTGTTGTAAAGAGAAAACAAAAGCTTGAAACATTGTTTTCTGTCTGTACAATTCATAAAATCACACACTTTCCATCGTGGTGTCTTTGTGATGTCTGTCCTCCATTCAGCCCTCTAGAAAAAAAGTCTCTTTCCACGTTTCCTCTTCTTTTAGAAATAGATATATATGATGCTTCTGAAAAAAGAAGCTTCAAATAGCCAGTCTCCATCCTCAGACGCTGTCTCTTTTTTTCATGCTACAGAAATGGTGAAGGAAAAGTAAAGAAAAACACCCACAAACTTCCCTACATTCAGAGACGCTTGTCTCCTGCTCTGTGTTCGATGGAGACTTTAGGACATCTATTTGAGGATGAAAATGAAGCTGTAATCTCCTCCCATTCATTCTGGGCAGTAGCACCATCATCACATTACAAAAAGTCTCTGAAACACAGGGGTGACGGCCCTCGCCATCGAGACAGACCCATTTACAGTGAGACACCCGCACATCATCTGCTCATGCCTGTGCAATTAGagaataatgcaaataaaaacaaacagaaagccATAGTAATGCAATCATGTAAAAGATAACAAAAGGTCTTAAATAGAGGCTTGAATATCTGCTCTCGTCTATACAAAAGTGCACTATGAATATGCAATGCCAAATGGGTCCTCGTTGAGAAAAAAAGGAACAGAAATCAAGTGCGAGCTAGCATTCGCTGAGATCAATGCTTTATGGCCTGACGCTTTGCAGCCACTGGTCTCTGTTTGTTTGTCCTGAAGATGCAGGCGAATGTCCACATGGAATGGAGCCTATGACACCACCGACCATGACAGCAGGTTTAAGTGAGAACTGTGAtggttgtaaataataataaaaaaactcaacGGAGAAGCACACGAGTCAAAGCATTGGTGCAGGCCCCTgcacttcaataataataatgacacaaGGTGTTTTTGAATCGATTATTTGAGCAACATTCTTTATAAAAGATTTCCTGCTTTTCGTCACTTTCGGGTTGGTATGTGGGTCCTGCAATCCAGTGACTGcaattaaaatgtacattaacATCCACACACATCTACTTTATATAGATAGTCATATATAGAGAGATTgtatttccttgtttttttttccacacacaaAAAGTAACAAATGAAATCGAATAAATTAAagtcaaacatgcacacacacacacgcacacacacacacaaaaaagactgATGTGTAGGAAAAGGTTTACATAGCCACCCATGTGTAAAAGAGGGCCTCGTCTGTCTATTTCTCTGttcatttttaatgcataattaaattaataatcttGGTCATCTTGTAAACATCATAATAAATCATTTTGGGCCTTCACTTTTCTTGTAGTTGGTTGTTTTCTTGTCATCTGCAGCGTCTCTAAGCATGATAAATGAGGCCACTCAAACTTGTGTTTGTTAAGGGAATTCATAGTTCTCCTTCTACAGCATAGATTAGGGCTCAGCCTCCGGATCCTCTTTATCCAGTTGGGAAGTTTCGGCGTGGTTCATGGAAGCATCAAAACTCTCTCCATTGTCTTTGTCTACTTCTGGCTCTGGCATGGAATCTTCATACGAGTCTGTATTCATATCGTCCTCCGCTTCGTCCTCTTCCTCATCGTCGTCATCATCGTCGTCCTCTGCTATCGGCTCTTCCTCAGGTGACAGGTCATCTTCCAGATCGCCGGATGTGCCGGTAGTGTCATCCTGAGGGTTGCCTAGGCCCATTGAAGCAATAGGGCCAGAACCGGGGGCTAGGGACAGGGGATCTCGGTGCATCTTTTTGCTTAGGTCCATGGAGTCACTGAGTCCCAACCCGGCAGCATTTTTCAGGAAGAACAAGGAGCTGTTGGTATCCGTCCCCAGGTTTAGAGAACTGTCAAGGTTGACTGCTGAGCCTGGATGCTCATATTCATTAACGGCCCCTGTCGAAGGGAGGTGGAACATGGTCATATTGTTGTGGGTCAGCCCTGGTGTGCTAGGTGAGGTCGGGGGCAGATTCATGGGCATTGAGGGAATGGCTAGGCCTgcatggtggtggtggtggtggtggtgatgatggTGGTTGCCATCCTGGTTGGGGGAAACGGAAGGCAGCTCACCCCTCTCCTGCTTCTCATGCTTGCGCTTGTGGGAATCCATTTGGGACATGCCCACCACTGTGTGCTTGCACTCTGGGTAAGTGCAGTGGAAGTGTGAACACTTGAGCTTGTACTTGCAGTCAGCCACCTCGCAGTCCACGCTAGAACTGAACTGACAGAATCCGGCAGCACTGATCACATCCTGCTTGCCATGATGCTTGCGATGCGCCGTCACCTTGGTGCTGTCTGTACAGCGGAAGCCACAGCGCAAGCAGTGGAAATGGGTGCTGTTTCCAGAGAACTGGCAATCAGGGAAGTTACAGCACAGTGAGGACTTGAAGCGCTTGAAGTCATCTAGGACCAGGTTGTCCACGCGGTCGTGGTGCTGGGCATGCTTGTACATGTGAGTGCGGCCGCAGAACTTGTAGCCGCAGTTCTCCCGTGTGCAGTGATAGTGGGTGACCTTCAGGGAGAACTGGCAGGCCGTATCCTTGCAGTCCTCATAGAGATCATAGCGTCGGAAGCCTTCCAGCATCATGCCTTCATCCAGCATCTTGCGAGACGAAGCGGTTTTGCGACGCTTGCCGAAGGGTGACATGTCTTCGATGATCCAGAAGCGCTTCTTAGCTCCAGTTGCCGTAGGGATAGAGATGGTGTTACCTGGTTGAAAAATAAAGGAATAGACTGGTTAGCCTTGAATCCACATGAGGAGCAGCCAAGCAACTCTGTAAGCAGTAGTAACTACATGCGCCCTATCACAGAGGTTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044676 lncRNA upstream 57425 28895775 ~ 28896080 (+) True XLOC_021758
TCONS_00043168 lncRNA upstream 180389 28770322 ~ 28773116 (+) True XLOC_021754
TCONS_00043154 lncRNA upstream 532921 28391107 ~ 28420584 (+) False XLOC_021745
TCONS_00044845 lncRNA downstream 398357 29358666 ~ 29360865 (+) True XLOC_021762
TCONS_00044846 lncRNA downstream 435872 29396181 ~ 29402096 (+) True XLOC_021763
TCONS_00043183 lncRNA downstream 611769 29572078 ~ 29574354 (+) True XLOC_021764
TCONS_00044847 lncRNA downstream 620234 29580543 ~ 29583279 (+) True XLOC_021765
TCONS_00044848 lncRNA downstream 880550 29840859 ~ 29846879 (+) True XLOC_021767
TCONS_00043171 mRNA upstream 27748 28809002 ~ 28925757 (+) False XLOC_021757
TCONS_00043172 mRNA upstream 31418 28809024 ~ 28922087 (+) True XLOC_021757
TCONS_00043166 mRNA upstream 157348 28770225 ~ 28796157 (+) False XLOC_021754
TCONS_00043167 mRNA upstream 160616 28770301 ~ 28792889 (+) False XLOC_021754
TCONS_00043165 mRNA upstream 221192 28731379 ~ 28732313 (+) True XLOC_021753
TCONS_00043176 mRNA downstream 397481 29357790 ~ 29360865 (+) False XLOC_021762
TCONS_00043177 mRNA downstream 397481 29357790 ~ 29361618 (+) False XLOC_021762
TCONS_00043180 mRNA downstream 397879 29358188 ~ 29361169 (+) False XLOC_021762
TCONS_00043181 mRNA downstream 609584 29569893 ~ 29574744 (+) False XLOC_021764
TCONS_00043182 mRNA downstream 610077 29570386 ~ 29575691 (+) False XLOC_021764
TCONS_00043174 other upstream 27465 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043173 other upstream 50049 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043170 other upstream 153286 28800103 ~ 28800219 (+) True XLOC_021756
TCONS_00043169 other upstream 155957 28797426 ~ 28797548 (+) True XLOC_021755
TCONS_00043161 other upstream 338563 28614827 ~ 28614942 (+) True XLOC_021750
TCONS_00043178 other downstream 397481 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other downstream 397643 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043184 other downstream 628135 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043209 other downstream 2019076 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043219 other downstream 2472964 31433273 ~ 31433348 (+) True XLOC_021790

Expression Profile

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