RNA id: XR_005035941.1


Basic Information

Item Value
RNA id XR_005035941.1
length 5961
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118938699
representative False

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 15012827 ~ 15021150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGCATTGAGGAGTGCTCTCGGCAGTGGCTCCCAGCCATCGGACCTACAATTAATGGGGACAGGGACGGTCACTTTCCAGGACCTTGAGTGGGCCATGTCGGAGGTCAAACCAGGTGCCATGAGGCAGGTCGCCATCGATGTCCCCAAGCTGTAGAGAGAAATCGACACTGGGCAAACTGCATCTACAACTTCCTTGCCCCACGGTGCGCTGGTCGGATGTGGGAGGCATGGAGCAGGTGAAGCCGAAACTTAAGCAGGCGGTGGAGTGGCCTCTCAGGCACCACGAGGCCTTCACCTGCATGGGCATCCAGACCCCAAAAGGAGTACTACTCTATGGACCCCAGGCTGCTTCATGATCACCAAAGTTCTGGCCAACGAGAACGGCCACAACTTCCTTGCCTTTAAGGTGATGATCATTCAAAGTTTGATTGTTGCCTGTTATCTCCACCAGGTGGCCAATGTACAGGCAGGGAAGAGTCCTTTTTAGTCTTTTCTACACCTACAGGGTTCCCTAAATCCCACCCCTATAATGCATACTTTTGTAATGGATCAGTTTTGCAGTTGCATTGTGTGCATTGCCTTCAAGCACAGTTTCTTTTGTTATGGCTGACATGGCATGGACCTTTTGACGTTTCCACAACTAGGGAGATTCTACAACTATAGATAGTAAAACTAGTACGGCTTCTTTCCTTTTTCCAAAACATACTGTACTTAGCTATGGCCAGTGATTTACCACCAGCAGCCATTGTCTTGGCTTCACCCCTGTTAAAAAACAGGGATGTGCCCCTGATTATCTCAAGGACCTCAGAATCTTTGGCTTCCTTGGAGGCAGACCTACAGGCCTTCTCACTTGACCCCTCCGACCCCATGTTTGTCCTTTTCATTCATCACCCCACCCCGtcgtctcccttctctctctccaccccaatTCACAACTATCCCCTACACCCCTCGCCCTGCTCTGTCCAGGCCCCTTGATGGAGATTGATTGATCACTTCACTGATTGTTAATTGCCGATTCTTTTGGAAGTGGTTGCCGGGTAAGATGGGGCAGAAACTGTCAGCCAGCCTGATTTAGATTGGGTCAGTGGTAAAAGATAGTGGATAGGCTGTAATATAACGAAGAAAGACTTACCTCTTAAAGAGTGCTTACAGTGTAAAATTCTCTGAAAGGTTTTTCTCATAGATGCTATTTGTGAATAACGTCCAACCCAAATTGTTCGTAATTATGTTACACTTGATGTTTAAGCAAAATAAAATAGTAAGAAGTTGGCTAATACTTTTTCAATGACAAAATCATATTATTTTTCCCCAGTGTGTTAGCTTTGCCTCCGACACATTACCCTTGCTTCACTATACTTTTAGATGCATACTACTTGCGTCGTGTACAGTAAAACTCTAACActctatcaaaatatttttaCACGCCAATATGACTGTTactctagcagggtagaaatgTACCTATATAGAATATAACCCTCCCAGTGAGTAGCTGGTTAGAGAAATCAACAGATTAATGAGTCAGTCTCCACAACGTTGTCGTGTTCTGAGGAGACAAAAGGTGTCATCTCCCTGCCAGCCCAGAGGTGTTGAAGAGGGGGGATTGCAGGGGAGGAAGTGCGTCCTGACGGGCTGAGTGGATGTTTATCCGCctcggagggagggagagtgcaGAGTGGCCCCATCAACCTTACTTACCCTACCTCCTTTGTCCTCTCTGCCTTCCTTCTTAATGATCatttttccctctcttcccctcttcctcttaaATAACTATCCCTTTCATCTCTGAGAGATTTCTTGGCGGGTTGTCAAAAAGTTCTCAGTGGTTTGTTCATTGAGGTGTGTTCCTGTCCGATATTAAATAGTGGTCTAGTTAGCTTGTGGTTAGCTAGGTTAAATGTAATTGAGCGTGTATTACCAGTGTTATAATGATGTGAATGAATAGTTATAGCCTACTGTATAACTAGGGTCCTCGTACGGAAATCTCCTGGTCCTATAATGAATCACTGGACAGGAGAACCAACTTCCCTCACGGTCTTTCAGGGTCCAGAGTCACTGAGTAAATATGTAATGGAGTCTGAGAGGGCTGTCAGAGAGGTGAGTACCAGGCCAACTTTCATTGTCTATCATATACCCATTACACTAGGAGCATAAGTACTACTTCTGCTGAGAGGAAATTGCTTTAATATGCTACATTCTAATGTATATGCAATTACTGTATATTAATACCTCGCATATGTCGATACCAGGTCAGAGCTGTCACCCCCTCCATTGTGTTCTTTGATGAAGTTGTCGCTCTTACTGGAGATCGAGGAAGGTAAATATTTTGTCTCAGAAATGAAGTTCAAAACTTTTTCTACCTGATAAACATAATACTGCAGACTTGATGACCACGACACGGCAACTGCTTGCAAGCACACATCTTATTCTGAAAACTGGAAGCACGTATCAAGCCTCAATGAATGGGAAAGATAGGCACCATTTTTAATCATCAGCCTAGTTCAATACGCTGAATGGCATGTATTATCCCCAATTACTTGTTGAATGACTGAACGTCTATATTACCACAATAATTACATTATCAGTGTAATTATTGTACAGTGTAAAGCCGGCTGTGGAGTTCCCATGGAGTCAGTCCATGCTTTGCTAtcaacgcacgcacacatacactgacacacagacgaGCCAGTCTGTCCGGAGGCGCTTCAATGGGATGACACTGGGAACATCTGTGGCTTCAGGAAGAAGACACAACGgccagagagaggacacaggcCGCGACAAACAAGCCCTTCATTGTGTACGCCACAGCAGATGGGGGAAGCCAAATATGAGGCGTACTTCCCGGTAAACCCCCATGAAAGTCAATGGTGACAAAAGACCCCTCCAGATATGGTACAAACATGGCGTTCCCTCAAGCTAATTGGCCAGGGCCTGGGATGGGTCACAGTGTCCTTTCTTAACAAAACCATTTTGCCATTAGTGCATGTAGGGTGACATGTTGTATCTGTTTACTAggactgggaattgccagggacctcacgatgcGAGATTATCACAATACTAAGGTGCCGATATGTATTGTgtttctcacgattctatatgtattgcgatttgaGACAGCGATTTTATTCTGagttgatgttccaaacatattgcttactgtatgtctgctgcagacaGACGAGACAGCATGAGAGGCTACATATCAGAGTTGGGGGTCAACTTAAGTCAACTCAGGAATGGACTGGATGTAGTGTTCGACCTGACAAAATGACCCACTTCCAGTGGCGATTTTCTCATCTGAATTCCATGGATATCACTGAATTGACTGGATttgaagaagttatttggccacgaCTCTGCAGTTGCCTTTCAAAAGGACTTGATGCAGGGGAGTCAGTCAGTTCACTGCAGCAGAGCTCATATCTCCAGGCCActggccatttaaaaaaaaaatgcacttAGCAGTGATCTATAAAGGTTATTTATTGGTCTTAACTTCCCGCATTTAATCAATGAAGTGGCTTCATTGCTCATGAGCTGGAATTTAACTGTTGACACGGCCTGGGCTAGAGATGGAAGAGtgatattttgtgttttcttttctTGACGTGAAGCACCAGTAAATCTTCAAGCCTACCTGCCATAACTGCCCAAATCTGTTGGAATGAGTTATCtgatagtgagagagaaagacagagagcgagacagtagAGAGTCTGAGACGGAGAGaccgacagagcgagagacagacagattaagGGCATTGGGTCCAGAGAGAAAGCACAAGAGCGAGAGAATGAAAGATCGAGAGGGCAAGAGAAAGAAACCAAGCCCTGGATGAGAGGCAGAAGCAGCCATGGCAGATTTCTCCCTTTGTCATGAGGCATTTCCCCTATTCCTCCCAGGACCATAACTCACTGACAGGCCTCTTTTGTGTTCCTCTGTGGTAATGACGTGTGGCACTTACGCTGGCTCTGTGAACAGAGACAGTAAGAGTGTGTTTGgttttactgtccttgtgggGTCCAGAAGTCCTTACAAGGACAATTCTGGcaagtggggacatttcactggtccccacaaggaaaagggcttagggttaggggtttgggtttagggttagattaggcttaggttagggttaagtaacaggattttgaatgggaatcaattgtttggtcctcACAAGTATAAACcaaatgtgtgtgtctgacagcGATGGGGAGcaccagagggagggagagacactgCGCTGTGCTATGGAAAAGAAACCCCTTACTATTTCTGAGTGCAGGATGCTGGGATCTGACATCTTGAACAGATACATTTTTGGTTAAAACACATATCTCTCCACCCCtatcacccccccacccccttcatTCTgtactctctccccttcctcttgcCCTCTCCTCTTTGCTCTCTCAGTTAGTTGGGGTCTGCTGGTGTTGGGGACCGGGTCCTGGCCCAGCTCCTGACAGAAAGCTCAGAGACGTCGCCGTCCTGGCCACATCCAACCGGACTGATATGAGAGATAAGATAGAACGCGCAGAGAGTTcctgctctccctttctctctctatctttctgcttcccatccttctcttccttatcctccctctatctccaAAATAAACTTCCTGAGTGCTGATCAAAGACAGAGCCTGGGCCTGGGCAAAACACACCCAGGATGAAATGGCCTGGCGCTTTAATTTAAGGGTTTTCATTCTCTGTATCCTTCCTTTTAATTTTCCCTCTGTATTCTTTTCTCATTTCATTCTCTCTTTGTATCCTTCCCTCTTAATTCTCTGTGtccttccctcatctccctcttttctgtctttctctctccccatctatgtACTAACTCTATGTGAACATACTCTGCTTTCTGAAACATAATATTATGTCTGCTCTTATCGTAACGTGGAGTGATTAGGAGGGGGAAAACTGCTGTTATAGTAGACATTTTGACTCCTCCAATATCTGACAGGTGGCTACAGAGCTCCCATGGTGGGAAAGACCCTCACACTGCTCCCTTATGGACAGTTGAACAGCTGGAGGTCCCCTCCAGGGCCACTGTTGGAGAATTGACACTTCCCTGGCCTTCCTAGCAACTGAAGACcatttccttccttcctcctcccctgctACTGCCTGGCCTGCCACTCCAAGCTCTGTTAGCAGTGGGGGGTCGAGCCCCTGGGGTTGGTGGGGGGGCATGAGAAACCCCAGGCATCTCCTGCAGCCCCACCAAGCTAACCCTGCTGCTGCTGTCAGGAAGCAGAGGTCCTAGGCAGCTGAGAAATTAGAGTGGGGTGGCGCTATTTGAATGTGAATCACATTAGCCGTGATGGGAAATACAAGCCGCCAAATGTAGTTGCAATTTTTAGGGAACCCCCTCCCTTGGGCTGGCACCCCGCTTCCACTCCCGAACCACCCACTGTTGCacccctccaccactacccacAAACTGTCAACACACAGGAGAAGGCGGCCCTTTCCATGACAATGGCATGATAATGATGAGACAAATGAAGATTAATGGGATGTTTGGGTGTCAATGAGGCACATTGTCGGCAGACTGATGGAGCACAGGGACTTCTGGGTCCTTGTTGGTTTGATGGACATAGTggtagagggaaggagaaagggagggagggaatgacaTGGAGAGACGGGGAGTCTGCGTGTACTTATGGCATAGTTTGGGTGGGTCTGCTGTTGGTCTCTCAGCCACTAGTTGAGTCAAGTGTCTACTTTCTACTTATCTACCTCCTTTAGCCAGCTTTTAGAATGGGCTCTGCTGTGCAAAGGAAGCGCTCCATTTGGTCTATGTGGCATTTGTTAGGAGATTAATTCAATTACTGCAAATCTCTTGTGATGGCATGGAATTATTGACATCAACACTTGATTTTTATTTTCACCAATAAAAAGTTACTTCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1391579 lncRNA downstream 7477 15005016 ~ 15005350 (-) True G1218820
TU1391568 lncRNA downstream 13129 14999490 ~ 14999698 (-) True G1218812
TU1391555 lncRNA downstream 29364 14983210 ~ 14983463 (-) True G1218799
TU1391538 lncRNA downstream 44347 14968206 ~ 14968480 (-) True G1218782
TU1391537 lncRNA downstream 46938 14965646 ~ 14965889 (-) True G1218781
TU1391743 lncRNA upstream 7295 15028445 ~ 15028945 (-) True G1218965
TU1391787 lncRNA upstream 82248 15103398 ~ 15103720 (-) True G1219006
TU1391789 lncRNA upstream 83086 15104236 ~ 15104497 (-) True G1219008
TU1391801 lncRNA upstream 104641 15125791 ~ 15126038 (-) True G1219016
TU1391802 lncRNA upstream 112221 15133371 ~ 15133571 (-) True G1219017
XM_021561332.2 mRNA downstream 107262 14901333 ~ 14905565 (-) True LOC110488888
XM_021561327.2 mRNA downstream 370146 14542673 ~ 14642681 (-) False LOC110488886
XM_021561322.2 mRNA downstream 706051 14298386 ~ 14306776 (-) True LOC110488882
XM_021561319.2 mRNA downstream 715159 14291820 ~ 14297668 (-) True arl9
XM_021561313.2 mRNA downstream 791212 14207021 ~ 14221615 (-) True LOC110488875
XR_002468499.2 mRNA upstream 11196 15032346 ~ 15035966 (-) True LOC110488889
NM_001124536.1 mRNA upstream 34898 15056048 ~ 15061199 (-) True LOC100136280
XM_021561334.2 mRNA upstream 42066 15063216 ~ 15065941 (-) False bbs12
XM_021561333.2 mRNA upstream 42066 15063216 ~ 15065973 (-) True bbs12
XM_021561335.2 mRNA upstream 125155 15146305 ~ 15163835 (-) True adad1
TU1391564 other downstream 18448 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 455446 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 1297950 13705263 ~ 13714877 (-) True LOC110488853
TU1390042 other downstream 1301159 13683784 ~ 13711668 (-) False LOC110488853
TU1389002 other downstream 2170074 12841496 ~ 12842753 (-) True G1216443
TU1391998 other upstream 296643 15317793 ~ 15318160 (-) True G1219208
TU1394921 other upstream 2377191 17398341 ~ 17399235 (-) True asb5a
TU1398282 other upstream 4814728 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 5112561 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 5300628 20321778 ~ 20325219 (-) True G1225505

Expression Profile