RNA id: XM_021561354.2


Basic Information

Item Value
RNA id XM_021561354.2
length 3255
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC110488902
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 15617903 ~ 15628633 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTcaaccgccgttaaacctcatcgaagaagATGATGGCTATTGTGTTTTTGTAACTGTTGCATGCCCACGTCGTTTGAGCCAGATGAGTCTCCGTAGCTAAGTAATCATGAGTCACGTGCGAGGAAGAGGAAATATTGAATGAGAATTCTGAAAGACACAGCTGTCGCAATCTAGCCACATTTTTTTCCTGATGAATATTGATGTTGCAACAAGCGTCTGTACATATACAAATATACAATGCGTCTTTAAAGTCCATACTTTGATCGCTCATTAGCTGTCATGTCACCCTGTAATTGTATGAGCTAGCTACTAGCTAATACCTGTGCCTAACGGCGACGGGTCGAAGAGCGTACACCTGTGCTAGCTATCCATTAATTTGTGAAAATATCCAGTACGCCAGTAGCTTGTTAGCACCCAACCCAAGGAAGGTATATCTTGATAGAATGCGATGGGAAACTGTTGGGCTTATTGTTTTGGAATCTTCAGAAAAGAAGCAAACATTATACAACGAGGAGGCGGGTCCAAATACTTTAGAAGCAGTACAACTGGGGAACATTACACAATAGAGTTTGAAAACCTTGTTGAGAGTGATGAGGCAGAGAGCCCACAAAGCTGTCCCAGGCCTATCAGTGAAGATGAGATCATCCACCTCAAAGAGCACCGGTATACTGCAATTTCGGATCAGCAGAACTTGATAGACGAGAAGTTGCAAGCAGAGTTATTAGCACAAGAGGAGAAGTTAAGGCTAGAAGAGGAGGCTAGAAATGCTGCCCAGCGTGAGGCTGCCAGGCTGGCACGCGAGCGAAAGCTAAAGGAGCAACAGCTTGCACAACGGAAAAAAAGCAAGGCAGAAGTCCAAGGTGGCGCAGCCCATCCAAGAAAGCATGGCTCAGGTGAAGACTTTGATGTCTACCTACAGCATGTGAAAGTCATGTCAGAAGCCTTCAGGAGCAGCAGGCTGTCCTCTGAGACTAATGTGATCACTCCCAACACGGAGAGCAGCTGGGACTTCAACAGCAAGACCCGCTCCACCAACGATGACGGAACCTCACTGGACCTGGAGTGGGAGGACGAGGAAGGGATGAACCAGGTGGTCCCAGCGTGGGAGAGGTCTAAAACCGAGGAGGACATACTCCGAGCGGGACTCCGGCCGGGCAAGAAGCAGACGACCAGCGGTACGGCCTCCGCCTCTGAGGACTCCAACGCCCTGGAGTGGGAGAACGACTTTGTAAGCGCTCGCGGCGAGGATTATGCTGAGGAGAATGCAGAGGACTCTGAATATGAGTGCTTTGTCAACCCCGTCATGGATATGCACACCCCATCTGAGGAAACCCCTCCGGTAGAGATAACTGCACCGGAGACTGAGAAGAGATAGTCCCCATCGCCTGGGGATCCAGAGTCAAATCCTAATGTTAGACCACATTGTGAATGTTTGATTATACACCTCATCAACTTCAAATGTGTTTGTTTGTCCTCATTGGCTGGTGGACCAGTTTTTATTTGACAATCTTCTCTTGTGTTAATTAAGCCTTAGTTGGCAAAGTTTTCATGTCATCCAGTGCATTATTGAATCAAGTGCAATTTCCAGATCTAGTTTGGTGTGATAGTGATTGGGTTTTTATTTGTGAGAGGGCTATAGTGTTTTCACAGTTAGAATGAACTCAAAACAACATAGGGACACATAAAATAAAAGCAACAACAACCTTCAATCAGTGCCTGAATCACTAGGAAAAAAAACTTTCATAAATTGTTAACCAGGTCATAGGACAGTTAGCTGATGAGGATTTTGTCCGTTACCAAGTGAATATTTTGATCAGTGTTTCTCCAGGGATCATAGCTTGCCAGTTGTCTGGTATGGAACATGTAGAGAACCCCTAATGGAGTGGAGTATATCATGTAGCAACTTGTCTGTACACTCAATGTGTTTTTAATCCAAAAAAATGCAAGTGCTAAGATTTGCGATTTTGTTTATCCTCTCAGCTCCAATTAACCAGTGACTCACCATGGACACACAGTACTACATTTAGTTATTTGTTAGTTTGAAACTAAATGTGTTTGTCAGTCAAATGCTGCTCGAGTTATGGACAGGTTTGTGTCCaacatatttatttgtattatataCCGTGAAGGTTGGCTACATCACGTTTGTAGAATTCCTTAGTCCTCTATGTACACATTTAAATCTTACATCGTCAGACTTTTCTATTCTTTTTCATGTTTAGGATTGATTTGTCATGGTGAGCAGCTCGTGAATTGTTTATTTTACGCTCAAGACCAGCCGATTACAAGAGAACATGGATAAACGAACATCTGTCTCCCGCACTGCTCCTTCCAATGGCACTGCCAATAGCGTACAACTTGGGCTCCAACTCTTCAATCTCACCTTTATTTCTGATTTAGCACAGACATTTTTCAAGACCTTTTAAGAATGTAACCCTGATCACTGGAAGTGGACATGGTTGTATTTGATTGAAATGGTTGATGTGAAGACAGGAATAACGAGGAACTGTTTGGAGACTACAGTATGCTCTAGGAGGTTTCTAGAAATGGACCAATACGTGTATATATCATTTCTTTGTGTGCACTAGTAAATTAGTTTTTGTCTTCCCTCACTGCAAAAGGGGAACCTCTCACTACACCCTTACAATGTGGAGATGATGTGCCTACTTTGGAAGCTTCTGCTTTATTGTACAGAATACTGTCTCACCTTGATTTTTCAATTGTTGTGATGTTTGTGACAACAGCGATTGTCCCCTGTAGTGCAGCCCTACTGTACCTGGGGAATCCAAAGCGCCACCATTTAGGTTGTTTCACCCCATTGAGAGAGAATGTAACTTTCCTTTGTTTGTACTGCCTGTAGCTTTACCATTCTAGAAACACAAGCCATTTGATTTTAGCAATTAAAGTGTCATCATAATTGGGGTGAAGAATTACCACAGTTGCACCATTGGCCCAACTCCAAATCGGACCTCCTATTTGTCTGGCATCAAACTCAATGCACAATATTTTGTCCACAGAAAGTGTTCAGACTGTAATAATTGGAGGGATTGTAATTGCAGCTTATCTATGCACTGTTTGATTTACGTGAACTGGTGGGTCCAATCAATGATTGGTTTATAGTATGTGTTTGTAGTGTTTTCCAAGGATACTGTCCTTTTTTTTAACGTAAGTTAGCATGCTGATAAGGGTTGGACACCGTACATTATGGGTGCAATCACAAGGATGGATTAAACTGCCGTGTGCTTATTTCATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1392466 lncRNA downstream 668 15616480 ~ 15617235 (-) True G1219642
TU1392463 lncRNA downstream 1495 15615913 ~ 15616408 (-) False G1219641
TU1392462 lncRNA downstream 1595 15615913 ~ 15616308 (-) False G1219641
TU1392464 lncRNA downstream 1595 15616033 ~ 15616308 (-) True G1219641
TU1392494 lncRNA downstream 9280 15608387 ~ 15608623 (-) True G1219669
TU1392505 lncRNA upstream 4957 15633590 ~ 15635557 (-) True G1219680
TU1392982 lncRNA upstream 50333 15678966 ~ 15679259 (-) True G1220111
TU1392983 lncRNA upstream 51222 15679855 ~ 15680357 (-) True G1220112
TU1392984 lncRNA upstream 52008 15680641 ~ 15680873 (-) True G1220113
TU1393078 lncRNA upstream 198111 15826744 ~ 15827206 (-) True G1220199
XM_021561353.2 mRNA downstream 55208 15558914 ~ 15562695 (-) False LOC110488901
XM_021561352.2 mRNA downstream 55216 15558914 ~ 15562687 (-) False LOC110488901
XM_021561351.2 mRNA downstream 113098 15502250 ~ 15504805 (-) True nanos1
XM_021561350.2 mRNA downstream 245097 15370261 ~ 15372806 (-) True lbx2
XM_021561335.2 mRNA downstream 454068 15146305 ~ 15163835 (-) True adad1
XM_021561363.2 mRNA upstream 154454 15783087 ~ 15804150 (-) True LOC110488905
XM_021561367.2 mRNA upstream 209972 15838605 ~ 15860073 (-) False LOC110488908
XM_036943034.1 mRNA upstream 209972 15838605 ~ 15860074 (-) False LOC110488908
XM_021561368.2 mRNA upstream 209972 15838605 ~ 15860075 (-) False LOC110488908
XM_036943035.1 mRNA upstream 209972 15838605 ~ 15860342 (-) True LOC110488908
TU1391998 other downstream 299743 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 623524 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 1060522 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 1903026 13705263 ~ 13714877 (-) True LOC110488853
TU1390042 other downstream 1906235 13683784 ~ 13711668 (-) False LOC110488853
TU1394921 other upstream 1769708 17398341 ~ 17399235 (-) True asb5a
TU1398282 other upstream 4207245 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 4505078 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 4693145 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 4837097 20465730 ~ 20470523 (-) True G1225647

Expression Profile