RNA id: TCONS_00043199


Basic Information

Item Value
RNA id TCONS_00043199
length 728
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_021773
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30048849 ~ 30055719 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTGACCTGACAGGAGCTGGAGCCGCTGTAGAGATGATCTGTAAGCTGTTTGTGTTCTGCTCTGTGCTCCTGCTGTCCTGCAGTCTCCTTTCTGCTCATCCCGTTACAGACACTGCTAAAATGACCAACATTGGCCCGGATTCAGTGGAAGAGGCCGGAGGTGTCAGTATAGATGATTTCTCTGTATCTGACCTCACTGATGTCCTGCAGAGGGCAGCAGCCGCAGCACATTCACCACTGCTCAACAGAGACAGTATCAAAATGTCTGGGCAGATTTCTAAAGACGCTCTTAAAGAGTTTCTGCTGGAAAAGCCATATCGCCTGGTTCCTCCCAGTGGTCTTTTGGGGAGCAGAAGGCAGTTCAGAAAGAGAGGTGGCGGTGCAGACTGTTTCTGGAAATACTGTGTTTGAGACATTCACCACACACTCCACGCAGTCACAGGGCTTTTATAGACTTTCCAACCACTCTGGACTCACAATTATACAACAACACAAATGCAAAATGTACAAGACAAAGTTACAGACACATGCAAAaacttgtaatgtaatgtaaaatatctGCCCATTTCTTTTTCTACACACATCTAGCTTTTAATGCATCTATGCATTTTTACTGAGATCCAATATTGAAATACTTCATTGCCAATACTATCTTTACAGAAGAGAGCAACAGCCGTGTGTTATAAAGCGTGAAACTCtaaataaatgccaaaataaaacaataata

Function

GO:

id name namespace
GO:0008217 regulation of blood pressure biological_process
GO:0097746 blood vessel diameter maintenance biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040630-11 Predicted to enable hormone activity. Predicted to act upstream of or within blood vessel diameter maintenance and regulation of blood pressure. Predicted to be located in extracellular region. Is expressed in spinal cord. Human ortholog(s) of this gene implicated in gestational diabetes; hypertension; and type 2 diabetes mellitus. Orthologous to human UTS2 (urotensin 2).

Ensembl:

ensembl_id ENSDART00000126027

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043197 lncRNA upstream 38807 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043195 lncRNA upstream 39450 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00043198 lncRNA upstream 39659 30006236 ~ 30009190 (+) True XLOC_021772
TCONS_00044848 lncRNA upstream 201970 29840859 ~ 29846879 (+) True XLOC_021767
TCONS_00044847 lncRNA upstream 465570 29580543 ~ 29583279 (+) True XLOC_021765
TCONS_00044849 lncRNA downstream 346595 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00043203 lncRNA downstream 708568 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044850 lncRNA downstream 1022845 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043214 lncRNA downstream 1189712 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA downstream 1190073 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00043196 mRNA upstream 39076 30006206 ~ 30009773 (+) False XLOC_021772
TCONS_00043193 mRNA upstream 56391 29966466 ~ 29992458 (+) False XLOC_021771
TCONS_00043194 mRNA upstream 56391 29973937 ~ 29992458 (+) True XLOC_021771
TCONS_00043192 mRNA upstream 110648 29908348 ~ 29938201 (+) True XLOC_021770
TCONS_00043191 mRNA upstream 136586 29908348 ~ 29912263 (+) False XLOC_021770
TCONS_00043200 mRNA downstream 652118 30707837 ~ 30724909 (+) True XLOC_021775
TCONS_00043201 mRNA downstream 674402 30730121 ~ 30752553 (+) False XLOC_021776
TCONS_00043202 mRNA downstream 681176 30736895 ~ 30751969 (+) True XLOC_021776
TCONS_00043204 mRNA downstream 772240 30827959 ~ 30845859 (+) False XLOC_021778
TCONS_00043205 mRNA downstream 779870 30835589 ~ 30845859 (+) True XLOC_021778
TCONS_00043184 other upstream 460291 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 686004 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 686316 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 1122809 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043173 other upstream 1145393 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043209 other downstream 923666 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043219 other downstream 1377554 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 1377860 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 1611710 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 1877956 31933675 ~ 31940874 (+) True XLOC_021797

Expression Profile

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