RNA id: XM_021561363.2


Basic Information

Item Value
RNA id XM_021561363.2
length 6413
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC110488905
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 15783087 ~ 15804150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGTTCTCCTAACTTTACTTTGTAGCTACAAGCTGATGAACCGAGAGGCTGGGAGCCAGCAGCTGTGTGAGTGAGTAATGCAGTAAGCTatgagtgtatgtatgtgttagaGAGGGAAGCAAGAGTTATAGTTATAGGGTTTGTAATTTGGTTCTCTGACTCAACTTAAGGGTTGTAAGGTTGTTGGTATAAAAAGGATGTAGGGTTATCTTTAATTTCATTTTAATTCTGTTTTGTTAGGAAATACATTTTATTGTTTCATTGATAGATTTAGCTGTAATTGTTGGTATATTTTGTGCTGATATTCAGAGCTCTGTAAAAGTGTAAGAATATGGGTGGATGAGCAGTTTGATTCATGGTATTTACTGATAAAAACATAATTCTATGTTTTGTTGATTTATAACTCAGATATTGAACTTTCAACATTTTGCTGTAGCAGGCTATTTTCAAAGGAGATATTTTCTATCAAAAGGTTGAACTTTTTTTCATCAGTCATCAGTATTTAAATTGAAGAAGATCATTTTAGAGTAGGGGCAAAGAATTACACCACCTTATCTCAGTAGTTTATAGTGGGTGTTAGACATGCCCTTTTAAATGCTGGACAGGACAGTAATATCTCACACAGTCATGCTGCTGGCTCTACTGCTGGTTCTGTGTCTTGCTTCTGGGGCCCAGTCTTCAGACCCGGCCCCAATAACAGTTATGTACAGAGTCTGGGAGGAGCAGCCTGTGGGCACCAGGGTCGGCCATCTGGTCGATGACCTGCGTCAGAGAGGCGAGACAGAGGCATTGGAGGATTTCCAGGTCGTGGAGCATGGTCAAGCCCTGCCTTTCTCCATCGGAGCGAGCGACGGAACTCTCTCCACTCTGGGACAGCTGGACCGGGAGGAGTTGTGTCGAGGCTCGGACCTGTGTGAGTTGGCCTTCAGTGTCCTCTACAGGAAAGGTGGTGCTATCCACTTTCTGAGGGTGCGGGTGGAGGTGATGGACCTGAATGACCACAGCCCCACCTTCCCCAGTGGCAAGCAGGAATTGGAGATCTCTGAGACGGCCACGTTGAGGATGCGGATTCCCCTGGACCGAGCCGTGGACCCAGATGCCGGCCCCAATGGACTGCAGACCTACTCACTGTCCGTTAACCAGCACTTTGCCCTGGATGTAAGGAGCACTGCGGATGGGCCAAAGCAAGCAGAGCTGGTGGTGATAAAGGAGCTGGACAGGGAGGTGCAGTCCTCCTTCGAGCTGACTCTGGTGGCCTGGGACAAGGGGAACCCTCCCAGGTCGGGCAGTACTCTGGTCAGAGTCAAAGTCTTGGACTCTAACGATAACAGCCCCATGTTTGAGGATGGCACCCCCACCGTGGAACTAACTGAGGACACAGCCCGTGGAACTATTGTCATCAACCTCAAGGCCACGGACCCTGATCAAGGGGCCAATGGGGAGGTTGAGTACTCTCTAAGCAAACATGCTCCACCTGAGGTGCAGAAGCTTTTCAGTGTCCACCCCCAGAGTGGGGCAGTGACCTTAAAAGGCGAACTGGACTATGAGGACAAACACTCTTATGAGGTGGACATCCAGGCTCGCGATCTTGGGCCCAACGCCATCCCCTCTCACTGTAAACTACACGTCAAGCTGAGGGACGTCAATGATAATGCACCAAGGATCCACGTGACTTGGACACCTCCTGATTCCCCAGTGGCAACTGTTTTAGAGGGTGCACCGGAGGACACATTCCTTGCACTGGTGATGGTCTCTGATGCAGACTCCGGGGACAATGGGAATGTGCACGCCAACATCTGGCACGGATCAGGCCACTTCCGCCTCAAGAAAATCCATGGCGACAACTACATGATCGTAACCAATGGCACCCTGGATCGCGAAAAGGTCATGGAGTATAACCTCACGTTACTTGCCCAGGATTATGGTGACCCTCCACTGTCATGTGTTAGATACCTAGTTGTCCATGTGTTGGATgagaatgacaatgcccctgtgttCTCCAAGTCCCACTACAGGGCTTCCTTCAAGGAGAACAATGCCGTAGGCCTACAGGTCCTCAAGGTAGAAGCTAATGATGTGGACATTGAGCTCAGCGGCAGGGTGTCCTACTCCATCCGAGAGTCCAATGAACTGGGAACTCCCACGGCGTCTTTTGCCATCCACCCCATCAGTGGCGTAGTCAGCGCCCAGCAGTCATTGGACTATGAGGAGTCTCCAACCTACTCCTTCATCGTGGAGGCCATAGACCATGGGCATCCACCCCTCACCAGCACTGCCATGGTACTCATCGAGATCCAGGATGTCAATGACAACTACCCCGTCATCAAGGAGCCAATGCCAAAGAAAGGCATAGCCTTTGTGAGCGTACCTGTCAACGCAGAGAAGGGGGAGATGGTGACAGAGCTAGGGGATGGTGCTGAAGAAGGCTCCACCTATCCTCCGATCGATCGCTCTGCACAAAATGGACTTTCAGGATTCCTGGCCACTACCATCAAGGCCAACGATCTAGACTCTGGCCTCAATGGAAGACTCAGCTACATGATCACAGATGGAAACCCCACAGGACTGTTCAGACTTGACGACACTACTGGACAACTGTATGTTAACACGACCAATGCGACAGAGCTCATTGGGAAGACTTTCAAAGTGGATATCGCTGTATCGGACAAGGGCTCTCCAAGGCTAGTGACAAAGGTCACCTTGGAGGTGACTTTCGTCAACTTGCGGGACCATCTGAAGAACTCAGCCCCTGGTAACCGTGGCCATCTGAGTTTCACCATGATGATGGCCATATGCCTTGGGGCCAGCTGCCTCCTGCTTCTCCTGGCTGTTGCCCTGGTGACCACCTTCTGTAGACCCACGAAACGAGACAACCATGCCTACAACTGCAGGATGGCTGAGTCCACCTACACGCGTCACCCTCGCCGTCCACAGAAGAACATCAGGAAGACGGACATCCAGCTGGTGCCAGTCCTGAGGGGACGAAGGGAGGACCCTCCGGAAGACGAGGATGAAGCCCAGCCCCTCTCCCCTATGCCCCTGGTGGTTGAAGAGCAGCAAACCGAAAGGCAATACAGCATAGCCACCTCCATGCACCCAACAGTCCACTCCCAGGCCTACCCTGATGGGGGCGCAACGCTGCCAGTCTCCCATACCAGAACACTCAGGAAACCTGGGAGCATCGAGCTGGACGGCACTCTCCCTCAAACACCCACCACTCCTTACCGAACCCTGCGCAAGGCAAGAAACCCTTCGTtgtcctcctcactctctcaGAACAGCACCCTGAGGAGACATGGGAACTCTGAGATCCAGGCTAGGCCTGACGTTGAAGAGCCAGAACCATCCTCCCCAGTGTCCCAGGTAGCAACACTTAGAAAGTCCAAGAACACAGACACCAGAGGTGGACATGATGCTGAAGACCACAGACGGATACTGAGGAACTTAGTCCGTCTCTCCATGGCTGCCTTCGGAGACAACTCCATCGAGCTGTCTGCTGCCTCTCCAGAAGTACAGCAGAtctcccagctcctctccctgctccaccAGGGCCAGCTGCAGCCGAGACCCAACTTCCGAGGCAACAAGTACTCCTATCGCGCTGGCAGGACCGGCGTTCAGGACACTGATTGTCAGAGCACCAAGGACAGTGGCCATGGCGAGAGTGAAGCCGGAGACATGGACTGGGACACGGGCCGAGACTCCCCTGTCAACCTGCTACTGGAGGAGGACCTTAACAACCTGCTCAACAACCCTGATGACGTCTTTGCTGACATAGAGGACCCTGCATGGATGGCCcgcctctccctcccactcactgcAGACTACCACAAGAACATTTTTGTCCCCGACGGGCCACCGTCCTCCGACACCCATTGCTCCCCAGACACCCTTGACgactcctccttctccaccttcgGCAAGACGCCGGAGAAGGATGGCCCGCTGGGCGGGGCCTTGCTCTCCGAGGTCAACACCTTGTTTAACATGCTCCTGACCCAGAAGGGCGACTCCCAATCACGCCCCTCGCCAGATGTGCTCTACAGATTGTCTGCCGCCTACCGGCGCTCGCTGGGGCTGGACGGAGCTGCCAATGCGCCACGGAACTCTGGGAACCCCGAAAATACGTCCCCTCTGGCTCATTGCTCGGCCCAATTCCCTTAGGCCTTGTCTTAACATGGTTACGTCATGGAATTCAGTCTAAAAGAAGTTGTAAAAAAGACAGtctctacaagccagaatgttgaatacaatGATATTCAAACGTACGTTGCCGGTTGTCTGTGCTGTTGGTCCTTTTGGCAGTAGGAAGTGTAGATAGGGTATCCACAGGAAAGTGTTGTTTACACAGCTTTTTGCCACGCCATTAGTTTCTGTCACTTGTATTTTCCATCTCCTGATGCATTTCAAGTGATGCACAATATGTCAACATTAGCCGGATGTAACTGAATGTTGTTGACCAAAGCGCATTACTTCAAAAGCAGCTTGAAGTGCTTGTGAAATTTGCCAGATGATTACGTGGGACAACGTTTGGTCTGTGGCATCTTTTACATATTGTGCATGTCGCTTGCCGATTTCGTCAGCATTGAAAATACAAAGCAACATACAGACCAACGTACTGAAAGTTGGGTTGATAACACTACtctgtggatattttgtctcaGATGACCTCCTACATCAGGACAAAATCAGCAGACAACAGGTAAATTACATTCAGATGAAGTTTATTCAACAGTCTGACTTGTGATGTGACTGTTCACAAAAAGGgagcctacatgttagagacgAGAGTCGTCCACTCTTGGATTCGTAGAGGCTATCTTAGACCCAACTCCTGGTTTGAAAACAGTTGCATCAACTTCATTTGATTGGTTCCTGTGTGTTAGGGCTATTTAGAATGTCCAGTATGTTCTTACAATCCCCCCCAAACCGGTGACTGTGTTTTCCTTTTTGCTGTGGTTGCAGAAATGACTGAACTGCTCAAGCTTACAACAGCAACCTCTTCTCCTAACATATCCCCATTAGGAGATGTCAATTACACTATTAGCCCCAGACAGACTGCTTCCCTGTCTGGAACAAGCCAAGGCCAGAAAAGGGAGAGGAGTTAACCTAAGGTCTTTGTTCAGTGCTGGAACACGGTCAATGCACTATACAGTACTCCCTACATAGCACAGTGTACATTTAGCTTGAGATAAATGTTACACAAGTAAACTGTTTCCCTCATGTGGCACATTCTCCCCTGTATCATTCTGATAAACACttctgaccagagagagagagagttaatcaGTGGGAGCAACAACACGGTGCTATTCTTTATTAGCGTTGTCCATGGTATGAATGGCTGAGTTTGGCAACCCAAGCAAAGAGTCCAAGAAGGAAATGGCTCTTTGTCTTTTCTTAAGAGAAAACACTAGCGAAACTAAGTCCTGTTCCTGAGGATGTCTGCCGCCATTTCCTTCAACTCCATTTTGAGAAATGTCTCCATTGTTGATTACTATTTGTATTTACTCAAGTAAATTCCTTAGCTACTGAAAAATGTAATATTTACAGAGGTAAATATGCTGTTTATTGAGGTCTGTGTAAGAAAACATAAACAGGATTTGGTTTTAGATATTTGAATGGCTGTAAAAGTGTTATAAATTAACTTTTTTGACAAAAGGTGTAATTTGTAACCTTGCTTGGGAGAATATGGCATTTTTTTGGCCATAAATCAAACCAGCAGCACTTTGTACATACTATTttctaaaacatttaaataaaattgTTTGAAAACAGCATCATGCTCATTTCATCCTACAAATTCCACGATGTTGAGgattttgactttttttttttaaatttgattttcTTTGGGTGAGAACATGGAGACTCACTGCAAAAAGAACATATCTAGGAAAAACCTTTGTAAGACAACGACCTCTGGTGCTTTTTCCATGTAATTTTTGTATATTGACTCGTGATGAACCAGTAGCTGGAGTTTTCCTTATTCTTCATATACCAAGgccttattggaattctttcaaAGTGCATCCTTCATTACTCCCTTTCTTGAACAAATAATGGGCTTGATTAAATCCGTATTGCGGAAGTTCTGCGTTACAGCacgattgaaatgtaaaggtaattccAGATTGAGCTGACATGTGATGCTGTCTCTGCCAACGCGGGAACACTCTTTACATTTGCATTTACgcaatacggattgaatagagccctcagACTAGACATGACTGGACAGGTGAACGCAAGTGTGCCAGTACCAGATGCTTCTCCTGAGGGTAAACTGAGTAATTGTTACATGTTTTCATAGGCAACGGGATCTACATTATAAGAATAAACAATGTTAAAATTTGACATCTTTATGTATGGGACATTGAAGTTATTTTGATGGTAACAATATTGTTTGTT

Function

GO: NA

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1392984 lncRNA downstream 102214 15680641 ~ 15680873 (-) True G1220113
TU1392983 lncRNA downstream 102730 15679855 ~ 15680357 (-) True G1220112
TU1392982 lncRNA downstream 103828 15678966 ~ 15679259 (-) True G1220111
TU1392505 lncRNA downstream 147530 15633590 ~ 15635557 (-) True G1219680
TU1392466 lncRNA downstream 165852 15616480 ~ 15617235 (-) True G1219642
TU1393078 lncRNA upstream 22594 15826744 ~ 15827206 (-) True G1220199
TU1393084 lncRNA upstream 30587 15834737 ~ 15835011 (-) True G1220205
TU1393086 lncRNA upstream 32526 15836676 ~ 15836896 (-) True G1220207
TU1393082 lncRNA upstream 38767 15842917 ~ 15843171 (-) True G1220203
TU1393153 lncRNA upstream 133535 15937685 ~ 15938231 (-) True G1220265
XM_021561354.2 mRNA downstream 154454 15617903 ~ 15628633 (-) True LOC110488902
XM_021561356.2 mRNA downstream 154463 15617903 ~ 15628624 (-) False LOC110488902
XM_021561353.2 mRNA downstream 220392 15558914 ~ 15562695 (-) False LOC110488901
XM_021561352.2 mRNA downstream 220400 15558914 ~ 15562687 (-) False LOC110488901
XM_021561351.2 mRNA downstream 278282 15502250 ~ 15504805 (-) True nanos1
XM_021561367.2 mRNA upstream 34455 15838605 ~ 15860073 (-) False LOC110488908
XM_036943034.1 mRNA upstream 34455 15838605 ~ 15860074 (-) False LOC110488908
XM_021561368.2 mRNA upstream 34455 15838605 ~ 15860075 (-) False LOC110488908
XM_036943035.1 mRNA upstream 34455 15838605 ~ 15860342 (-) True LOC110488908
XM_021561370.2 mRNA upstream 60737 15864887 ~ 15888346 (-) False LOC110488909
TU1391998 other downstream 464927 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 788708 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 1225706 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 2068210 13705263 ~ 13714877 (-) True LOC110488853
TU1390042 other downstream 2071419 13683784 ~ 13711668 (-) False LOC110488853
TU1394921 other upstream 1594191 17398341 ~ 17399235 (-) True asb5a
TU1398282 other upstream 4031728 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 4329561 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 4517628 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 4661580 20465730 ~ 20470523 (-) True G1225647

Expression Profile