RNA id: XM_036943040.1


Basic Information

Item Value
RNA id XM_036943040.1
length 4074
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC110488910
representative False

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 15889408 ~ 16064840 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATGAAGAAGCACTTGTAGGCTACCTCGGGCATTTAGGCCTACGTCATTAAATTAAATGAGCGGAATATGAACATGAACATCAACCTGGAGCTGCTGCCTTTCACATTTCCCAACGCCCACTTGCAACACTGTATGGTATCTCTTTAACCACTCCGCTCTGActcgaggagagagagaaaaaatatccCCCCCTTTTCTGGCAACCCTTCCTGGTGAGCATTGCATGCTTTTGCGACTGAGTAGTCTACCCGAGAGCAGAGCGCCGCGCAATAACAAACCCAGTCCTCCGCTCCGACTGCCAGGCGTAAAGAGGCATTTATCTCCTGGAAGCACCGCAAACGAGCAGAGAGAGCCCAGATACCCCGCACTCGGTTCGGACATGAGCCCGGGGATCCGGAGATGAGGCTCCGAAATGGCACCTTCCTAACGGTCGTATTGTTTGGTCTATGCGGACTCATTTCGCTCTCCTGGTACACGGCATTCAGCAATTCCAAAGgtgatgtggTGGACATTTACCAGCGGGAGTTTCTGGCCCTGAGAGAGCGTCTGCACTCTGCCGAGCAGGAGAACCTGAAGCGATCCAAGGAGCTCAACCTGGTGCTGGACGAGATCAAGAGGGCCATCGCTGAAAAGCAGGCCCTTAGGGACATCAATCGCACCTGGGCCAGCCTATCTGtGTCGATCGTGATGGGCGTGCCCAGTGTGAAGAGGGAGGTCCACTCGTACCTGACGGACACCCTCAGCTCTCTGATGACAGAGCTCAGTGCGGCAGAGAAGGAGGACTGTGTCATTGTGGTCTTCATAGCTGAGACGGACCAACAGTACGCCAACAGCGTGGCTGACAACCTCAAGCGCCTgtttCCAGTGGAGATCCAGTCAGGTCTTCTGGAAGTCATATCTCCGTCTGTCCACTTCTACCCCGACTTCTCCCGCCTCAAAGAGTCCTTCGGAGACCCCAAGGAGAGGGTCAGatGGCGGACAAAGCAGAATTTGGATTACTGCTTTCTCATGATGTACGCCCAGTCTAAAGGGACCTACTATGTGCAGcTGGAGGATGACATTGTTGCGCGTCCAAATTACTTCACCACGATGAAGAACTTTGCCCTGCAGCAGCCTTCTGAGGAGTGGATGATCTTGGAGTTCTCCCAGCTGGGCTTCATCGGTAAGATGTTCAAGTCCGTGGACCTGTCGCTGATCGTTGAGTTTATGCTAATGTTCTACAAGGACAAGCCAATTGATTGGTTGCTGGATCACATCATGTGGGTTAAGGTGTGCAACCCAGAGAAGGACGCGaaacactgcgACAGGCAGAAGGCCAACCTGAGAATTCGCTTCAAGCCCTCTCTCTTCCAGCATGTGGGCACCCACTCTTCCCTGGCCGGAAAGATCCAGAaactcaagGACAAGGACTTTGGCAAGCAGACCCTGCACAAGGGCCACGCCAACCCGCTGGCGGAGGTGACCACCAGCCTGAAGACGTACCAGCACTTCACCCTGGAGAAGGCCTACCTGGGAGAGGACTTCTTCTGGGCCTTCACCCCTGTGGCTGGGGACTTCATCCGCATCCGCTTCTTCACGCCCGTCCGCAtcgaaaggtATTTCTTCCGTAGCGGGAACATTGAGCACCCAGGGGACAAGCTGTTCAACACCACTGTGGAGGTGCTGCCTTTTGACAATATCCAATCAGAAAAAGAGGCcttgaaagaggggagagagaaaacaccAAAGTACCACAGAACAGAGGACGGCTTTATCAGAATAGGAGTGTTCCATAATGGGATCGCCGAGGGAGAGGTGGATCCCACATTCGGGCCCCTGGAAGCCCTTCGTCTCTCTGTGATCACAGACTGCCCCGTCTGGGTCATCCTGAGCGAGATATTCATCAAGAAAGCAGAGTGAATGTCAACACCCCGCAGCAATACCTCAGTCATCCATCCGTTCGACCGTTCGACAGAGGAACAGAGCCTTTGAAAGCTATACTCATTCCCTGGCTTTTGGCAATTAGTTTCTCGAGCGTAGTCGGAGTGCGCCATCTGTTGGCGAGATCTTGCCATCGCAGGGTCCTTCTGAGACTGTCAACTCAATCCAAGGTTGACAGACCGTGTGGGAAGATCTTCCCAGACACGTGTAATCGGAGAACGCGCCCTGCGTGAACGACACAAAGACGACGCTGTATTTAGGAAACTGTATTTATGTGTACATAAAGGTTTATGTTTTAAATAATTGTAATTACACTGGTAATTGTCAAATAGCTCGCAAGATTGTTTAGCTCCTTTTGATGACATTATGACAATTAAATGTTGCTGCTTCGGAATCAAAGACTTGGCCTACAACGTTACCAAGATACAGGTATGTCTGAATTGTGCAACTTCAATAACTGATAATCATGTTTGACAAATGTTACTGGTTTTACCCAAATGTATTCCCAGTAGGCAGAATCTACCGCACACTCATAGCTGATTTGTGAAGGTGCTGGAGGCAAAATGCAAAACTGGAGAAGCAGGAAACAGTCTCCACacacaaaaatgtatttaattgtggCTGAGCTTTCGGGCAGTCGATCAAATGTATTCAGAAAATACCTATGTATGTGGATATAGGCCTAATATGCATATTTATGTAACACAATCATATGAATGATCTCTATTATGTGTGTTGATATGTATTTACAGTGAGTGTCCACAAAAGTCAGTCAGAaaagtagcctaggcctatacAGTGTAGATGGAAATATAACTTTAGCCAGAAAGTACACATGTCTAATGTTTGAATAAAATATCTTTATATGGTCAATTCTAAAGCCAGAAGTTAATGTAGGCACATTATGATTATGGTTCCAACATCTGTTTGAGATTTATTTCATGAACCATCTTCCCTaacattgttttttccccttcTCCGCCTATCAATTTGCCTTAATGTGACATGAAGTTAACCAGGTTGTGGGGATAAATCAATGTAAGGCAAGGCCAGACACAAGCTACTCAATTGCATTAGCTAGGGAACTGGAAAAGACAGCGGCCTCAATAATACAGGAAACATTTCTGATTTACAGGAAACATATCTGTTGGATTTTCTATGTCTGCCACATATCAGATACACAGGGTTAGTTGTAATCCAAGGAGCCACATATCAGATACACACGTGGAGTAATTGTCTGGACTAGTCGGAAGTAAGAGAAATATGTAGCTCTAATCAATGCATGAAGAATCATCTTTACTTCTCAGTAGAATCTATGTTTCTCATAATGACCATGAAGAAGTCAAGGAATGCCCTCAAGTGAGGTCTCATGAGAGAGTGAAACTGTCCAATATGACAACCCCTCTCGTTCCACATGTTCTGCACTACTACTATAATGAATTGATGGTGGAATTTATTAAAGTACTGTAATTGTCGTGACACCAGACTTATACATCTTCCAAACAGGCTCTGTGACGGCAAGGGCCAAAGTTCTATGTATTGCTAGATGCAAAGTATTTTGCAGTTAAAGGGACACATTAATTTGCTTTTGCATACTTGGATCCAAAAAACATTCCTTTATCAGAGCCCAACTGAAAAACCATTGAAAGCCCTTGATCGAAATCTGAAGAGTTGTCGGCACAGAACAGGAATATGGGATTTCAGCCAATACAAGTGTACTGAAAGAGAAATTCAACTTGGGGACTTAACTCAGAAGCGAAGCCGCTTTTCTATCGAATACAGAATGCAACATTGATTCTGATTCTGATCAATGTTAACACAGTTTCTCAGCAACAACTGACCTAAACTTGTTTTCCATTTATTGGGGTGTGCACTCCAGTAAACAAGCTGTTTTAAGAGCCCCTTCGTTGCTATCGGTATGGCCACTATACAGTAGCAGGTGCATGGGTGCATTAAGTCAACGTAGGGCTACGGATAGAAAAATCTGAACTGTACCCAATGAGCTAAGGAGGAGAAAGAGTTTTATTTTCTTGTAAGGTGCACTGGAATGCATTGCTATTATATGTTGTATTTTGTATAATTTAGATAAACTATATTTAATGATGTTATCTATCCATTCTGTGAATTGTAATAAAGACGGAATTTCAATTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1393082 lncRNA downstream 46237 15842917 ~ 15843171 (-) True G1220203
TU1393086 lncRNA downstream 52512 15836676 ~ 15836896 (-) True G1220207
TU1393084 lncRNA downstream 54397 15834737 ~ 15835011 (-) True G1220205
TU1393078 lncRNA downstream 62202 15826744 ~ 15827206 (-) True G1220199
TU1392984 lncRNA downstream 208535 15680641 ~ 15680873 (-) True G1220113
TU1393209 lncRNA upstream 16439 16065647 ~ 16065857 (-) True G1220312
TU1393210 lncRNA upstream 16886 16066094 ~ 16066340 (-) True G1220313
TU1393211 lncRNA upstream 17843 16067051 ~ 16067266 (-) True G1220314
TU1393266 lncRNA upstream 122375 16171583 ~ 16171880 (-) True G1220363
TU1393120 lncRNA upstream 139040 16188248 ~ 16262154 (-) True G1220235
XM_021561370.2 mRNA downstream 1062 15864887 ~ 15888346 (-) False LOC110488909
XM_036943036.1 mRNA downstream 1062 15864887 ~ 15888346 (-) True LOC110488909
XM_036943035.1 mRNA downstream 29066 15838605 ~ 15860342 (-) True LOC110488908
XM_021561368.2 mRNA downstream 29333 15838605 ~ 15860075 (-) False LOC110488908
XM_036943034.1 mRNA downstream 29334 15838605 ~ 15860074 (-) False LOC110488908
XM_021561372.2 mRNA upstream 18872 16068080 ~ 16114181 (-) False LOC110488912
XM_036943041.1 mRNA upstream 18872 16068080 ~ 16114181 (-) False LOC110488912
XM_036943042.1 mRNA upstream 18872 16068080 ~ 16114181 (-) False LOC110488912
XM_036943043.1 mRNA upstream 18872 16068080 ~ 16114181 (-) True LOC110488912
XM_021561376.2 mRNA upstream 70661 16119869 ~ 16192632 (-) False LOC110488913
TU1391998 other downstream 571248 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 895029 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 1332027 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 2174531 13705263 ~ 13714877 (-) True LOC110488853
TU1390042 other downstream 2177740 13683784 ~ 13711668 (-) False LOC110488853
TU1394921 other upstream 1349133 17398341 ~ 17399235 (-) True asb5a
TU1398282 other upstream 3786670 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 4084503 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 4272570 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 4416522 20465730 ~ 20470523 (-) True G1225647

Expression Profile