RNA id: XM_036943043.1


Basic Information

Item Value
RNA id XM_036943043.1
length 5932
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110488912
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 16068080 ~ 16114181 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtggtaaccgtTTTCGAGTAGACAACAGCAGAGCAACCAGCTGCACAGACGGACATGAACTCAAAACAGCAGGCAACACGTCTGCAAAACATGCTTGTGTGAAGTCGCTTACCGTACGCTTTGCACCATAATATCCAACAATAAGTGTGTAATTTGGAAAAAGCTTTTTCAAAATGTGGATAACTCCAGAGGAGGTGTTGCTTGCCAACGCTCTGTGGGTGAGCGAAAGGGCGAACCCCTTCTTCATTCTCCAGAGGAGAAAGGGCCATGGCAAAGGAGGGGGCATCACTGGCTTGTTGGTGGGCACCATGGATGTTGTCCTGGACTCCAGTGCCAGAGTGGCTCCCTATAGGATCCTGCACCAGACAGGGGACTCACAGATCTTCTGCAGCATCGCATGTGGGCATCATCGCCGAGGAGAACAAGAGCAAGGCTGCCCTGGAGGATGAGGACTCTGGCAAGTTCCGTGAGGCTGAACTGAAGATGAGGAAGCTGTTTGGCATGCCCGGCGAGGAGAAGCTGGTCAACTACTACTCCTGTAGCTACTGGAAGGGCCGTGTGCCCCGGCAGGGATGGGTCTACCTCAGCGTCAACCACCTCtgcttctactctctcctcctgggGAAAGAAGTGACCCTGGTGGTGCAGTGGACGGAGGTCACCCGTCTAGAGAAGAACGCCACGCTGCTGTTCCCAGAGAGTGTGCGGGTGAGCACCCGGCACACGGAGCACTACTTCTCCATGTTCCTCAACGTTAACGACACCTTCAAGCTCATGGAGCAGCTGGCCACCATCGCCATGCGCCAGCTGCTGGACAACGAGGGCTTCGCCGCCGACCACTCGCTGCCCAAGGCCTGCAAGACGCTCAAGAATGTCTCGGCACTGAAGAGGGACCTGGACGCACGGGCCAAGAACGAACGTTACCGGGCCCTGTTCCGCCTGACCCAGGACGAGCGCCTGGACGGACACACAGACTGCACGCTGTGGACTCCCTTTGCCAAGATGCACATCGTGGGCCAGCTGTTTGTCTCCAACAACTACATCTGCTTCTGCAGCCGTGAGGAGGACCTCTGTCAGCTCATCATCCCCCTCAGAGAGGTGTCCATTGTGGAGAAGGCAGACAGCAGCAGCGTCTTGCCCTGCCCCGTGTCCATCAGCACCAAGAACAAGATGACCTTCCTCTTCGCCAACCTCAAGGACCGCGACTTCCTGGTCCAGCGCATCTCCGACTTCCTGCAGCGCACCCCTGAAAGTGGCCATTCGGGTTCTCCCAGCCCTAgtaccacccctctctcctccagcctcccCACACCCACTGGTGCAGCAGGGGAACCGTCCCAGAGGCGCCACTACAGCCCCAGCCTGCCAACAGCCACTCAGAGCCTGCTCCGCATCTACCAGAAGGACGCCCCAGAGGAACACGGACCCAAAGCTACAAAGGAGAAGATGAAGGAGGAGTCGTGGAACATCCACTTCCTTGAGTTTGGCaggggtgtgtgtatgtaccgtacctccaagaccagagagctggtGCTCAATGGGATCCCTGAGAGCCTCCGGGGGGAGCTGTGGCTGCTCTTCTCAGGAGCTCAGAATGAGATGGACACCCACCCTGGCTACTATGCTGAGCGGGTGGAGCAGGCCATGGGACGCTGTACCCTGGCCACGGAGGAAATCGAGAGGGACCTGCACCGCTCCATGCCTGAGCACCACGCCTTCCAGAATGAGATGGGCATCGCTGCCCTCCGCAGGGTCCTCACCGCCTACGCCTGCCGCAACCCTGGCATAGGATACTGCCAGgcgaTGAACATTGTGACGTCGGTACTGCTGCTGTACTGTACGGAGGAGGAGGCCTTCTGGCTTTTGGTGGCTCTGTGTGAGAGGATGCTGCCTGACTACTACAACACCAGGGtggtgggtgCTCTCGTTGACCAGGGTGTGTTTGAGGAGCTGACTCGCGCTTGCCTCCCTTTCCTCTACGAGCACATGCAGGAGCTGGGAGTCAtctccaccatctccctctcctgGTTCCTCACCCTGTTCCTCAGCGTCATGCCCTTCGACAGCGCCGTGCTTCTGGTTGACTGCTTCTTCTACGAGGGCATCAAGGTCATCTTCCAAGTGGCACTGGCCGTGCTGCACGCCAACATGGACACCCTACTGGACTGCAATGACGAGGGAGAGGCCATGACCATCCTTGGACGgtATCTGGACAATGTTGTCAACAAGCAGACCGTGTCTCCGCCCATTCCCCACCTCCACGCCCTGTTGACCAGTGGCGATGAGCCGCCGCCTCAGATTGACATTTTCCAGCTCATCAAGTCATCCTGTGAGAAGTTTGGTAGTTTGCGTGCTGATGTCATCGAGCAGATGAGGTTCCATCAGAGGTTAAAGGTCATCCAATCGCTGGAGGACACCGCCAAGAGGAGCGTGGTAAGAGCTATCATGACAGACTCAGCCTTCAGTATCGAGGAGCTAGAGGAACTCTATGTTCACTTCAAGGCCAAGCACATAATGAGCTGCTACTGGGGGGCCAGCACCACAGCGGCGGAGCGCCACGACCCCAGCCTGCCCTACCTGGAGCAGTACCGCATTGACCTGGGACAATTCTGCCAGCTGTTCGGGGCCCTGGGAACCTGGCTCTGTGGGACGCACACCGCCACGCTGGCCGCACGCCTCTTCCGCCTGCTGGACATGAACAAGGACGGCCTCATCAACTTCAAGGAGTTTGTCACGGGTCTGAGTGGGATGTACCACGGAGACATGACAGAGAAACTCAAGTTACTGTACAATCTTCACCTGCCGCCAGCATTGTGTCCAGAGGAGGCTGAGTCGGCACTGGAAGCTACACAGTTATTCACTGATGACACTCcacaggaaccTCCCTTCCTGTCTGATCTGGACTTCCTGGTGCAGGAAGTGACATCAGGAGAGGAGGTGAAAGAGGCTGAGGACGCATTGGGAAGCGGAGATGCAGAGGAGAAGATAGAGGTGAAGGACTATAAGTACTATCTGCGGATGTGGGCCATGGAGAATGAGCCCAAGAAGGAGACCATTAAAGACCTTCGCAGGATGAACCAGgaGCAGTTCATAGAGCTGTGTAAGACCCTGTACAACATGTTCAGCGAGGACCCACTGGAGCAGGAGCTCTACCACGCCATCGCCACTGTGGCCAGCCTGCTGCTGCGCATCGGAGAGGTGGGCAAGAAGTTCACCAACAACGGCGCCAACAAACCAACCGACACCACCAACGCCCAGGCTCCCGCCCCCGCTGCTGAATTGCTCCAACCTGAAAAAGAGGAGCCGAACGGGGAGAGCAGCTCAGGGCAGTCCCTGGTCTGCAGGGCCTTGGCGGAGGCCCAGCTGGAAACGCCGCCTCAGCAGACGTCGGACGAAGAAGTGAAGGATGACACGTCGGTCTCGTCCTACTCCATGGTGAGCACAGGTTCTCTGCAGTGTGAGGACATCGCCGACGACACAGTCCTGATTGGCTGCGCCGGCGACCAGCAGCGGCGGGGAAGCATATTGGACGGCGATTGGTCCATTACCTTTGAGCAGGTGCTGGCGTCGATGCTCACCGAGCCGCCCCTGGTGGACTACTTTGAGAAGAAGGGAGACATTCAGGCAAGGATGGCTATCTGTAAGATGCAAAGGAAGGTGGAAAGGCAGGTGAGCTTGTCAAGCGACCACGAATTGGCCCAGCTCTCAACCTGACTCACCTCACTTCTCATCCGTAGGGGAAACCCATCACTGTCCTACTCAAGTTACTGTTGCTCCTTGCCTCACTACCATTTCATAGGGAGCTCTAGACCTGTATCTCTGTTGTGATTGTCATCCTTATACAGAAccagatgtgtgtgtatataggaaATATATCTATTGAAACAAAATACTCCAGAGTCTGCCCAACGGATCCTACATTTTGATAAAAGCCACATGACCCAAAACAtttagggctggtttcccagaacCGCATTCCACCTAAGCCTGTGACTAGACTAAAAAGCACATTCAAAATATAGAGTCTCCATTGATCATGCTTTCTATTCCAGGACTAAGCTTTAATATtgatctgggaaaccaggccttgGAGCGTAGTGGCTAATCCAAGGGTAGGATGTTGGTACTCAACTGTATTATTGTATCTATCCCTGTGCCCTTTCTGTTGCTTCTCTGCACTCTGCGGACCACAATCAAAGCTGTGGATAAATGCCTTTAAATATAAGACCTGTATATGAGACATGTATACCTTTGTGTGTCTGTGAAATCCACAGCTGTCTCAAACTAAAGAAAGAAAGCCTtgccttaaaaaaaaaagagactaAACTGGATGTTAGATTTTTTTGGAAAGagcttgtttttgttttatgtAGTTTTTTCTTAGGAAGAACGTTGGCGTTACCAGTCGGTTCTCTGGCCAGTACTTGTTTTATTAGTCCCAATTCAGCAGTCTTAACTAACCGTCAATGAATCTGCAGCCTTCAGATAAGCATGGAGCTTCTCTCATTGGGTGACTTGCCTGCCACTCGTAACTTACTAGGGCCTGATTAGACTGTTCATTCATCAAATTACCTCAAGTATTGTTTTACCAACAGAAATACTATAACCATTACAGAAATACTAATACCATTACAGTTACTAGGCCTAACTGTCAGTTTTATCTATGTATTCGGGCCGAGGTAAATTGAACACCTGTAAGTAAGTGTTCGATGGATACCCCTGCAATGCACTTCTGTCGTTTCAGAATAGCAGTAAGGAAACACTTCCTGATGGTTTACTGAAAACAAGCAACTACTATTTTTTACTGATTTGCAATTACATTTCAGTCTAGAAATATTTGCTTAATGTCATGTAAGGCTTTTTGTTGGATTATCCATCACGCCTGTAGGTGTCAACCTGTAAATTGCTGCATATCATATTCGTAGTATCTTCTGTTGTTCAAAGCTTGTAAATGTAAAAAAGAGATGCTTTGTACGCAGTATTTTAATTTACTACAAACCCACAATGGTCACAAACAGATATTTTACACAGGCAATTCTACAGAATGCTTAATGCCCGCTTTCGTCAACAGCTATCGTTAATGTTTTACCAGAAAAAAGTATATTTTAACAACCCCTTTTAAAGCATTCAGCTCCCCTACTTCGGAAGGGACTGGACAGATGTAAACAATGGCTCCAGTCCGGATGAGGTTTGGGGATTGTCTGGAATATTGCTCACACCTATCTAGTTACTTCAGACACTAGAGTAGTAAATAGGAGTTAGGGATTGTTAGACAAGGCCATTGGCTCCTCACAGTTTGTTTCCCCTATGGCTATCCAGACAGGTCTGGTTATCAGCTGAGAAATGTGCTGCCGCTGCTCAATTCTAATCTCAGAAATGTTCTTCTGTAACACTAAAACCAGACTGTAGTAAAAGGTTGTCTGGCTGGCCCATTGTGCATAACGAAACACAACAGTCCGGCGTTGTTTGTAGCATTACATACCAAGTTTATCGTCACTTTGTAAGATAATTGTTTTATACCCCAAGGTAAATTTATCACAGTGTTATTTGGCCTAAAACACCAAAGTACCATTTCATTCAATtgtatgttgtttttctatttttttttgcaCACAAACCCTGTCTCACTCTTTGTATATTATTTGCTTTGCACTTGCCTATGTTTCTGATATATAATGAAAATGACTAATTGTACTTGTTTACCTTGCAGACTACTTTCTAAATGTGAAAACAAAGACTGAGGAAGCAGTTTGGGATCCTTTTTGGATCTAGGATAGCCTATGTGGCCGTTGCAAGTCTGTTTATCCACATATAGCTATAATGTCATCACTGTATTCATGTAACAGATTTATTTATTCACAAACTTGCATTTTAAATTCTTTGATCAGTACTGTGCTATGTTGTGTACTAAATACAAATAGTGAATGGA

Function

GO: NA

KEGG:

id description
K19951 TBC1D8_9; TBC1 domain family member 8/9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1393211 lncRNA downstream 814 16067051 ~ 16067266 (-) True G1220314
TU1393210 lncRNA downstream 1740 16066094 ~ 16066340 (-) True G1220313
TU1393209 lncRNA downstream 2223 16065647 ~ 16065857 (-) True G1220312
TU1393186 lncRNA downstream 74720 15992948 ~ 15993360 (-) True G1220291
TU1393153 lncRNA downstream 129849 15937685 ~ 15938231 (-) True G1220265
TU1393266 lncRNA upstream 57402 16171583 ~ 16171880 (-) True G1220363
TU1393120 lncRNA upstream 74067 16188248 ~ 16262154 (-) True G1220235
TU1393335 lncRNA upstream 163821 16278002 ~ 16278311 (-) True G1220430
TU1393348 lncRNA upstream 176251 16290432 ~ 16290650 (-) True G1220443
TU1393353 lncRNA upstream 180905 16295086 ~ 16295297 (-) True G1220448
XM_036943038.1 mRNA downstream 3240 15889408 ~ 16064840 (-) True LOC110488910
XM_036943039.1 mRNA downstream 4114 15889408 ~ 16063966 (-) False LOC110488910
XM_036943040.1 mRNA downstream 18872 15889408 ~ 16049208 (-) False LOC110488910
XM_036943037.1 mRNA downstream 18876 15889408 ~ 16049204 (-) False LOC110488910
XM_036943036.1 mRNA downstream 179734 15864887 ~ 15888346 (-) True LOC110488909
XM_021561376.2 mRNA upstream 5688 16119869 ~ 16192632 (-) False LOC110488913
XM_021561378.2 mRNA upstream 5689 16119870 ~ 16192628 (-) False LOC110488913
XM_021561377.2 mRNA upstream 8397 16122578 ~ 16192626 (-) False LOC110488913
XM_021561374.2 mRNA upstream 8397 16122578 ~ 16192629 (-) False LOC110488913
XM_021561375.2 mRNA upstream 8397 16122578 ~ 16192630 (-) True LOC110488913
TU1391998 other downstream 749920 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 1073701 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 1510699 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 2353203 13705263 ~ 13714877 (-) True LOC110488853
TU1390042 other downstream 2356412 13683784 ~ 13711668 (-) False LOC110488853
TU1394921 other upstream 1284160 17398341 ~ 17399235 (-) True asb5a
TU1398282 other upstream 3721697 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 4019530 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 4207597 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 4351549 20465730 ~ 20470523 (-) True G1225647

Expression Profile