RNA id: TCONS_00043204


Basic Information

Item Value
RNA id TCONS_00043204
length 2196
RNA type mRNA
GC content 0.50
exon number 4
gene id XLOC_021778
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30827959 ~ 30845859 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGCAAACAAAAATATTGGATTTTGTGTAAAAACGCAGTAATGCATGCACTTTTCCATGtaataaactttcatttttatcattttaaaaaggcTATTATGGATTTCAAAGACACGATGGACAATGCAACAATGCAATCTTCATGCAACCTGGCCAGTCCGGTTTATAATCAGTCCAACTGCACCGTGTCTCCACCTTGGATGTTCCACCCAGATCTCTACATCTGGCTACCCGTGATTTACTCAATCATCTGCGCCGTGGGACTCACGGGCAACAGCGCCGTCATTTACGTGATCCTGAAGGCGCCTAAGATGAAAACAGTCACCAATTTATTCATTCTGAATTTGGCCATCGCCGACGACCTTTTCACACTAGTGCTGCCCATCAACATCGCCGAGCACCTGTTAAACTACTGGCCGTTTGGGGAGATTTTATGCAAAGTGATTTTGTCCATAGACCACTACAACATCTTCTCCAGCATCTTCTTCTTGACCGTGATGAGTGTGGACCGGTATCTGGTCGTGGTGTCCACTCTAGGATCCAAACGGATGCCCTACCGGACCTACCGGTTGGCCAAGACGGTCAGTCTGAGTGTTTGGGCTCTGGTCATTCTCGTAGTGATGCCCTTCACCGTTTTCGCCAGTGTTTACGTGAGTCCCGATGACGCGGAGAGCCGAAAGAGCTGCGTTTTGAGTTTCCCGAGTCCGGAGAGTTTCTGGTTCAAAGCCAGCCGGATTTACACGCTGGTCCTCGGGTTTGTCATCCCCGTCTCCACCATCTGCATCCTCTACACCGTGATGCTCTTCAGACTGAGACGGACGCGCCTCAGCTCAAACGGAAAGGCTCTGGACAAAGCCAAAAAGCGAGTCACTGTGATGGTCTTCATCGTGCTCGCCGTTTGCTTGTTCTGCTGGACTCCTTTTCATCTGAGCACGGTGGTCGCCCTCACTTCAGACTTGCCCACCACCCCGCTGGTTATAGGTATCTCTTATTTTATCACGGGACTGAGTTACGCCAACTCGTGTCTCAATCCGTTTCTTTACGCGTTCTTAGACGACAGTTTCAGGAGGGCGTTTAAAAAACTGTTGGAGTGCATGGAGTTGGTCGAGTTGTCTTACGTCCAACAGATGTTCAACGACTCGCGTTTTCAGGGGAATTTAAGTGCACTAGATGAAGTGGACGAGCCTCTACCTAGAAGCGCAAAGATCACCATCGTTGTTGTCTACTTGATAGTGTGCGTGGTGGGGCTCGTGGGGAACTGTCTGGTCATGTATGTAATTATCAGGTACACAAAGATGAAAACGGCCACCAATATTTACATCTTTAACCTGGCTTTGGCTGATGCACTGGTTCTGGCCACTCTTCCTTTCCAAGGCACTGATGTCATCCTAGGTTTCTGGCCCTTCGGTCTGCCCCTGTGCAAGGCTGTGGTAGCCATTGACTATTACAACATGTTCACAAGTGTCTTCACCTTGACCGTAATGAGTGTGGATCGCTACATAGCCGTCTGCCACCCTGTGCGCTCGCTGACAGTTCGGACCCCGCTCCGGGCCAAGCTGATCAATGTGGCGGTGTGGGTGCTGGCATCAGCTGTAGGACTGCCTGCTATGATCATGGGTCAGGTGGAGAAGGATGATCACGATGGTGCCGAGTGCATGGTGAGCCTGCCTGAACCAAGAAAGCACTGGGATCGTGTGTTCatgatgtgtgtgtttctcttctcTTTCTTGATCCCTGTGCTGATCATAAGCGTCTGCTACGGCCTGATGGTGCGTCGTTTGCGCAGTGTCCGTGTACTGTCCGGCTCACGGGAAAAAGACCGCAATCTGAGGAGAATCACCTATATGGTATTGTCGGTGGTGGCCGCTTTTGTGTTTTGCTGGATGCCGGTGCAGGTCTTGGCTTTGATTCAGGCTCTGGGTCATGTGGAACTCGGGGCCAGTCAGTCCTCGATGGCGGCTATGCATTTCTGCATTGCTTTGGGTTACGCAAACAGCTGTTTAAACCCCGTTCTCTATGCCTTCCTGGATGAAAACTTCAAGCGCTGTTTCCATGAGTTTTGTATCCCGGCCAATTCCGATCTCTTTCTAGAAGACCAGCGTAAGAGGTCATTGAGGCAGGGGAGAGAATGTGCTGAGCTGGAGGAAAAGGAGGTGGTGATTTATCATTGCGCTGCTCCTGTGTTAGCGGATTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000033429

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043203 lncRNA upstream 55073 30764287 ~ 30772886 (+) True XLOC_021777
TCONS_00044849 lncRNA upstream 394574 30402314 ~ 30433385 (+) True XLOC_021774
TCONS_00043197 lncRNA upstream 817917 30006206 ~ 30010042 (+) False XLOC_021772
TCONS_00043195 lncRNA upstream 818560 30006206 ~ 30009399 (+) False XLOC_021772
TCONS_00043198 lncRNA upstream 818769 30006236 ~ 30009190 (+) True XLOC_021772
TCONS_00044850 lncRNA downstream 232705 31078564 ~ 31085951 (+) True XLOC_021785
TCONS_00043214 lncRNA downstream 399572 31245431 ~ 31248945 (+) False XLOC_021787
TCONS_00043215 lncRNA downstream 399933 31245792 ~ 31248790 (+) True XLOC_021787
TCONS_00044851 lncRNA downstream 1017880 31863739 ~ 31885913 (+) True XLOC_021795
TCONS_00043238 lncRNA downstream 1182766 32028625 ~ 32038219 (+) False XLOC_021802
TCONS_00043201 mRNA upstream 75406 30730121 ~ 30752553 (+) False XLOC_021776
TCONS_00043202 mRNA upstream 75990 30736895 ~ 30751969 (+) True XLOC_021776
TCONS_00043200 mRNA upstream 103050 30707837 ~ 30724909 (+) True XLOC_021775
TCONS_00043199 mRNA upstream 772240 30048849 ~ 30055719 (+) True XLOC_021773
TCONS_00043196 mRNA upstream 818186 30006206 ~ 30009773 (+) False XLOC_021772
TCONS_00043206 mRNA downstream 13227 30859086 ~ 30890850 (+) True XLOC_021779
TCONS_00043207 mRNA downstream 52154 30898013 ~ 30919307 (+) True XLOC_021780
TCONS_00043208 mRNA downstream 121827 30967686 ~ 30981438 (+) True XLOC_021781
TCONS_00043210 mRNA downstream 139671 30985530 ~ 30996756 (+) True XLOC_021783
TCONS_00043211 mRNA downstream 154384 31000243 ~ 31022418 (+) True XLOC_021784
TCONS_00043184 other upstream 1239401 29588444 ~ 29588558 (+) True XLOC_021766
TCONS_00043178 other upstream 1465114 29357790 ~ 29362845 (+) False XLOC_021762
TCONS_00043179 other upstream 1465426 29357952 ~ 29362533 (+) False XLOC_021762
TCONS_00043174 other upstream 1901919 28925923 ~ 28926040 (+) True XLOC_021760
TCONS_00043173 other upstream 1924503 28903330 ~ 28903456 (+) True XLOC_021759
TCONS_00043209 other downstream 133526 30979385 ~ 30979499 (+) True XLOC_021782
TCONS_00043219 other downstream 587414 31433273 ~ 31433348 (+) True XLOC_021790
TCONS_00043220 other downstream 587720 31433579 ~ 31433663 (+) True XLOC_021791
TCONS_00043223 other downstream 821570 31667429 ~ 31667543 (+) True XLOC_021793
TCONS_00043229 other downstream 1087816 31933675 ~ 31940874 (+) True XLOC_021797

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_12556923_12557900.mRNA True 1917 mRNA 0.41 1 CI01000001 12556183 ~ 12558099 (+)