RNA id: XM_036943114.1


Basic Information

Item Value
RNA id XM_036943114.1
length 7036
RNA type mRNA
GC content 0.48
exon number 25
gene id limch1b
representative True

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19283198 ~ 19429045 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTACAGATGAACCTCCCCCAACTTCACTCGCCTAATTTCTACAGTCGGCTTCGTTAGGCGTACTGCTCGAACACACCCAATGATAATTCTCTTcactgctctgtgttgctgctgtcGGGAAACTGGGTGTGTGATCCGGAGTGGCTGATGGAATTGCTTGCTGTCTTTGCATTGGCTGACCGCACAGCAGCACTGCTCCGTGTATTTTTAGCCATCGATGCAATTCATATTGCGGTGCGAGCGAGGCTACACGGGAGTTACAGGGGGTAGCTGCAAGTGCAGTGCTTCGGGTTTGCGACATAGACCGAAGGAGAGTGGGGGAGACTGGCTACACAGCAAGtcaagtaaaaataaataaacggcATTATCGGGTTTTCACGGTCAGGTGCTGAGGCTGTAGCCTGAGGATTTTCCAATAGCCTACATTTTGTAGATTTATTGTTGGTCTATTTTAATACTGAGCAGCTTTGCAAATGGCAAGTCCCGCTGCAGATAGAGGACAACCACACCAGCGACATCCCCTCTCCGAATCGGCCTCGGAGCCCGCGTTTCTAGAAGCGCAGAAATGGATTGAGGCGGTCACAGGCAGATGCTTCAATGACAAGGACTTCAGGGGAGGCCTGGAGAATGGGATCCTGCTGTGCGAgttgcTGAGCTCCATCAAACCTGGCTTGGTGAAGAAGATCAACAGATTACCCACTCCCATCGCTGGCCTGGACAACCTGAGTGTGTTCCTGCGTGGCTGTGAGGAGCTGGGACTGAAGGGCTCTCAGCTGTTTGACCCTGGGGACCTGCAGGACATATCCACACGCCCCAACGCCAAcAGGGTTGCCGACTGCAGTAGGAAACTCAAGAATGTTCTGATTACCATATACTGGCTGGGCCGGGCTGCCAACAGCTGCACCTCCTACAACGGGCCCACACTGGACCTGAAGGAGTTTGAAGGCCTGCTATCACAGATGCGAAAGGAGGCGGAGGACACGGAGAGCCCCCAACGCAGCATACGGGACAGCGGCTACATCGACTGCTGGGACTCGGAGCGTAGCGACTCACTCTCCCCGCCTCGCCACGGCCGAGAGGACTCCTTCGACAGCCTGGACTCATTCGGCTCACGCTCCAGACAGACGCCCTCGCCGGACGTAGTGGTCGCCCGCGGCATTGGCAGTGATGGCCGTGGCAGCGACTCGGAGTCCGACGCCGGACCCCACGGGGGCAGGAAGCTGCCAGACGTGCGCAAGGATGACATGCTGGCTCGGCGGACCTCGGTGAGCGAGCCCCGCGTGATGGTGCCCTTCAATCAGTACCTGCCCAACAAGAGCAACGCCAGTGGCTACGTGCCCACACCGCTGCGCAGGAAAAGGGGTGACCACGAGAGCCGGGAGGAGGGCAGTGGAGGGGGTGGAGGCAGCCGCAAGAGCTGGAGTACCGCCACTTCGCCCATAGGAGGCGATATACCCTTCAGATTCAGTCACAGAACTGCTAGTGTATCAGATGACCCAGAgagtgTGAGTATGATTGACATGCGTTGTGAGGAGGACGCCATCTTGCCACACCACAGCCAGGTGCGCCACGAGCTCATGCACAACCAGTACAACATGATGAAGGAGGAAGAGGACCACTGGCAGGATGACCTAGCCCGGTGGAAGAGTCGCAGGAGAAGCGTCTCCCAGGACCTGAttaagaaggaggaagagaggaagatgaTGGAGAAGCTGATGACGGGTGAGGGGGGGGCCATCTCTCAGAGGAGGAAGAGCATCAAAACCTACCGGGAGATTGTTGAGGAGAAGGAGCGTCGTGAGAACGACCTCCGCGAGGCCTACCGGTTGGCCCGCACCCCTGAGGAGGCAGCGTTGGTCCTCCACCGCTACGCCCAGCGCTTCACCATCAGTGAAGCGGTGTTGGAGCGCCTGCAACTGCCCAAACTGCTGGACAGGAGCATCTCTGAGGATCCCACCGCTACCACCAACACACGTCTCACCCTCACCCCCACTTCCTGTTCTCCCACCCCCACCTCCTCGGAAGAAGATACAAATGGCCCCCTGAAGTACCTGAGGCAGCAGTCACTCCCGGCACCCAAGTTTACCGCTACTGTTGAGGCCCAGGTGGTGGGGTTCCCCCAGGGTTTGTCTCATCGCCCCCAGATCCGGTCACGCAAGCCTGAACCAAACCCCTCGATCCGGGCCGTCTCACCCAAGTCTGTGCCTTTGCTGATGCCCAAGCCTTACAATCAACCCAAGGGCATGCAGATGCTGGTGGGACCCAGGCCAGGCAAGGTGGACGGCTTGCTGCGAGTGAACGGCGACATGGGAAACGATGAGGTCACCACTCCAGAGAGCGAGGGAAGGACCTCCCCTCTACGGTTCTACCCCTCCCCTGCCACACCTACAGCCTCCTCTGATGGTTCCGACACACACCCATGTGAGGCCACTCCCCCACCCACACATAGCCCCTCCCCCAGGGCAAGCCCATTACCAGCCATGCCAGCTGTGGCACAGTGTGGCACAAGCACAGGCACTGCAGTGACATCATCTTCAGTGCCAGGAGAAAGTGATGCCCAGAAGAAGGATAATGCACAGGAGTCTAAACCACCTAGCCGGCCCACCTCACTGCCCTCGGAGCTGCAGAGCACAGAGTGTCTTGTGGAGGCGGGAGGCAGGTCTGCTGCAGGCCCACTGGGGGAGGAGCCCAACACAACAGAGACTGCAGTACAGCCCTCTCCAGCTACAGAGTCACAACAAGCTTCCAAAGAACAAACAGAAGTGTGTATGAATGCCACAGCGACTACACAGAACACCACTGTCCTCCGTCCAGTCCTATCAGAGCACGCCACACAACAAGCTCAACCAATGACCGCGACGGTCAGTGAGCCCAGCCTGAAGGTGTCTCAGAGAGCAGATGAAGTTGCTACCTTGGCTGATCCAGGACCTGTCAGAAACAAACCACAATGTGAAGCTCCCACAGCAGAGGGGGCAGAGCAGGAGCGTGGTACAGCAGCGGTCACTCAGGTGTCATCCCCGGTAGTGGCCCAGGCTAAGCGGGGTGACCGCTGGTCTTGGGACCCAAATGAGGAGCGAAAGCGTCAGGAAAGGTGGCAGCAAGAGCAGGAGCGCATGCTTCAGGAGAAGTACCAGCATGAGCAGGAGAAGCTGAAACAGGAGTGGGAGAGAGCGCAAAGAGAGGTGGAagacgaggagaggagatacCATGAGGAGgaGCGAAGGATACTAGATGAGACTGTGGCCCCTctgacccccctctcctccaccctgcccTCGCCCATCCGGGGGGACACCCCCGCGCCTATGGACCCCCAGAACACCATCGTCCGGTCGCTGGCCGACTGGGAACGCAAGCAGGAGCTGCTGGAGAGACAGGGGGGGAACACCGAGAGAGTGGTATGGAAAGGACAAGATAACGACAGGAGTAGTGACATCAGCACAGCGTCCAGAGATGAGAGTATGAAAACAGCAGTCAGCTCAATCAGCCAGAACAGCAGTCAGGCAGACAAGCTGACACCGAGTTTGCAGAATGGTCAGAGAGCACCACCCACCATGGCCGTTCCCCAGCCCCCCAACAAGAAACAAAATACAGAGGTCTTACTAGACTGCACCAAACCCAGCCAGCAGGCGCCCTCTCGGGACAGGAGGTCGGTGAGCGGTAAGAAGCTGTGCTCCAGTTGCGGTCACCCTTTGGGAAAAGGTGCGGCCATGATTATTGAGACCCTCAGCCTTTACTTCCACATCCAGTGCTTTAAGTGTGGGGTCTGTAAGGGACAGCTGGGTGACACCACCACGGGGACAGACGTGAGGATCCGGAACGGCCTCCTCAACTGCCACCAGTGCTACATCCGCTCCCGCTCAGCCGGCCAGCCAACCACATTGTGACAACGTTGGGTCAATGGAAAGCACACAGAGAAATTGTCTCCCTTCTTCCTACTTCTCCATATAATCAACATGTGTGGAATGTGTCTTGTCTGTCAATGCCTATGTGGGGATTTTCGCAATGTCTGCCAATCACATCCTATCGGGTTTATTGAAATGGTCCAAATAATGCCTGACATTGGAAAGTTGTGTGTACATAGAATATTAGTCCGACTGATCATAGTCAGCCTATTGATTCTATTGGCTATGTATGATCACAGCTCAGAGGTTCTCACTTCCTCGTATCCATATGCACCCACAAGCCCTCGAGAGGATGGTGGACATTTTGAATCTGAGCTCTGATACTGTAAATATGGTGTATACAGTATAACAGCCTCCATCACTTCAAAACAGTATAGGAAACTCATGAAAACACTAATGCAATGAAGTCTAACCAACAAATTTGGCACTTAGACAAAATATTTGTTTGTAAAGTATACCCTTTATTTGAATTGAATTATTCTCTGGTATCCAGGTTGTTAGATAGGCCTTATTAGTCTTTAGTTTGTAACTTAAGCTTCTAATTTGGTTGCTAGAGAAGGTTGTCATGATTTCCAATAAAAGTTTCAAGTGTATTCCATTTTGCCAACTTGAGATCTGTAGGAGTTTTTCTCAATGGTCAACTAAAGGCTTAGAGAAGCCTACTTTGTTCCTCCCGATTTTCACTTAAACCACAATTAACCCAAACTCTGGTTTAAATTCTGAAAGTTAAATTGTTTAGCTAACTATCTTCTTTCCAGGCAGCTTCAACACTGTCTTATCGTTTATTTCTTCCGTATTGCTTTAGTAGCCTACTGGATACAAAAAAATACTGTGCTGTCACTAGGCTATAGGCCTACATACATTACAGTAACTTTGCACGTCGGCCTGACAACGttatccttttctctctttctttgctAAAAAAAAATGTCCGCTCACAAAGTTTGATGTACTTGATTTTAAAGCAATAACGCGAACTGATGCATGTAAACTGATTGTGGAGGTAAACAACCATCATGGATTCATGCTACTGTACTAGACCATTCCGTAAACTCTTAACCGGTTCTCTTTAGGAATTTCAGGCTTGGAATGACATGAAACGTGCCTTAGGTAAACAGGTGATTGCACATTCAAGGGAAGGGAACCCAACAATGGTGTCcacttaaaggaaaactccacccaaaaactgTCTTTTGATATttatttcattagtccattgaTGATATAGTCTCAACTTGATTATTGACAAGAAAAACATGATCAAGAATATCACTTAAAATACAGAAATCAGCAATAGGCATCATATAGGGATTATTTCTGTATTGTGTATGTTACATGTCTTTTAAAACTTATTTGCtaacaagcaaaacattttgagactatatcaacaatagactaatgaaacaaatggCAAAGTTTTGTTTTTGgatggagttttcctttaagtgTGATGGGGTAGGATGGGAGATTTTTGTCCAAAATGCAGGAGAAACTGCACGAGAGCTTAACACCCCACCAATTTGTTTTGTTGATATTcccctttatttttttactcatgTCACAATCTACCAAaccttgttttctcatgatttcaTGATTTGCAGTGTCTTTCCAGTTTCAAAACGGAATCCAAAATATATCTAGGATATATCGTTGACATATTTAATAGCAGCCTTTCCCAACAAAAAATAGGATGaccattgatttttttttattattgtgtATCTGAATGTTTTGAGATTATGACTCTATATAGGCCTCTCTATGCCCTGTTGACAGTGATGACGATTTTGGTCAGCAATAAAAACccattttcaacaacaaaaatataaattaagCATACTTGTTGCGTTGTGAAATTATGGCTAAAATGTTCTTACCAGCAGGTGCACTTGATTAACATTTGGCTGCTAAAGATACCAGTGCCAGCAGTTTGAACGTCATTGTGAAATTATAGGCTACTATGGAGCAATTTCAGTGCCAAAAGAAATTGTATTTGAATTTCTGAATTTCGAATTTGTATTAGGATTTTGAATTTGATTGTAATACTTTTGAATTTGTAATTGTTGAATTCAGCTTTAGCTAATTGGGCTAACATAGTCTTGTGACATGTAGGAGACCTTGTTCAAACCCACTCAGTCACAAGAGCAAGATTTAATAGGGAGTGGAAAGGCTATCCTTAGAAGGGCTATGACAGgactattcaactatattcttATGGGGGCCAAATTGAGTTTTTTGTGACACTCTTCTAACTCCGATTGTTGTCGTCATAGAAGGGAACAGAAGGCTCCAGAGAGTCTTCGCTTTCAGGAATGGGGTCATAATAGCTCATAGCCAAGACGGTTCAAAAGTTGGCGCTAAATTCATAGGAAGAAAATAAATTCAACATGTCACATTGGCTTCAGAAACTGCATGAAGTTTATGTTTTACAGAGTGAGCATTTGATTATCTGTTCTCTACCTTCCTGGTTGGCAAAGTACCAGGATGTTGTCTCAGGTTTTGAATCTGAATTTAGAGAGCTGAAGTTGAATATATGAAACTTTGATTAACTTGAAATGATGGTTTGTAAACTTGATTCACAGACAATGAATGCAATACTTACCATAAGTTAAATTTATGAATTCAGTGATTCAATTCATGCATTACAAATTTAAAATATTGGAATTCAAATAAAATGTCTGTTGGCACTGAAATCGCTCCATAGGTTACCAGTGGTGGATATAATGTATGTTCAAGTGCTATCTTTAAATAAATCCATAGCCTACTCTGTCAGACATATGATCCATTCTCAACTTGTAGCTTACAGCTTTCCCTGTTTCGTCTGAGTTTATTTTTCTGATATAGTCCTACCATATTTTTAGGCTTCAGATCTGATTGTCTTTTTACTTTTACTTAGGAAATTAATACATCTCAGCTGATACTCTGCAGGGGGGCGTCTTTGTGTCAGAAATATCGATACCGTCTTAGCTGGATGAATAGTTTGGGAATGATACTTTACGTCTAAGTTCTGTATTTATTGTAATATTCACCTGAACATTACCCGAAGAAAGATAAATGTGATGTTCAAATGCATTGGCTTTATAGCATACTGTATGTTTATAAATAAAATgtaacaaatgaatgaa

Function

GO: NA

KEGG:

id description
K24422 LIMCH1; LIM and calponin homology domains-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1397461 lncRNA downstream 101253 19181622 ~ 19181945 (-) True G1224308
TU1397459 lncRNA downstream 103253 19179605 ~ 19179945 (-) True G1224306
TU1397458 lncRNA downstream 105588 19177004 ~ 19177610 (-) True G1224305
TU1397389 lncRNA downstream 215873 19066584 ~ 19067325 (-) True G1224240
TU1397332 lncRNA downstream 287395 18995459 ~ 18995803 (-) True G1224185
TU1397727 lncRNA upstream 71553 19500598 ~ 19500829 (-) True G1224534
TU1397740 lncRNA upstream 77964 19507009 ~ 19507209 (-) True G1224547
TU1397757 lncRNA upstream 90034 19519079 ~ 19519366 (-) True G1224564
TU1398148 lncRNA upstream 220081 19649126 ~ 19649978 (-) True G1224930
TU1398150 lncRNA upstream 222115 19651160 ~ 19651972 (-) True G1224932
XR_005035951.1 mRNA downstream 44047 19223774 ~ 19239151 (-) False LOC118938702
XR_005035950.1 mRNA downstream 44047 19223824 ~ 19239151 (-) True LOC118938702
XM_036943108.1 mRNA downstream 71630 19203778 ~ 19211568 (-) True tmem33
XM_021561443.2 mRNA downstream 71634 19203778 ~ 19211564 (-) False tmem33
XM_021561442.2 mRNA downstream 79576 19197524 ~ 19203622 (-) True bbs7
XM_036943117.1 mRNA upstream 291915 19720960 ~ 19722934 (-) True LOC118938704
XM_021561450.2 mRNA upstream 309162 19738207 ~ 19753042 (-) False LOC110488956
XM_036943118.1 mRNA upstream 313035 19742080 ~ 19753370 (-) False LOC110488956
XM_036943120.1 mRNA upstream 313035 19742080 ~ 19753790 (-) False LOC110488956
XM_036943121.1 mRNA upstream 313035 19742080 ~ 19753902 (-) False LOC110488956
TU1394921 other downstream 1883963 17398341 ~ 17399235 (-) True asb5a
TU1391998 other downstream 3965038 15317793 ~ 15318160 (-) True G1219208
TU1391564 other downstream 4288819 14993820 ~ 14994379 (-) True G1218808
TU1391105 other downstream 4725817 14556833 ~ 14557381 (-) True LOC110488886
TU1390045 other downstream 5568321 13705263 ~ 13714877 (-) True LOC110488853
TU1398282 other upstream 406833 19835878 ~ 19836319 (-) True G1225043
TU1398774 other upstream 704666 20133711 ~ 20134053 (-) True G1225499
TU1398810 other upstream 892733 20321778 ~ 20325219 (-) True G1225505
TU1398964 other upstream 1036685 20465730 ~ 20470523 (-) True G1225647
TU1399197 other upstream 1293992 20723037 ~ 20723236 (-) True G1225875

Expression Profile